CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_MAIZE (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.009e-47
Identity = 93/147 (63.27%), Postives = 109/147 (74.15%), Query Frame = 1
Query:   37 MALRSLATRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+LA++ A+     G  +      RG+ TV LPDL YD+ ALEP ISGEIM+LHHQKHH  YV NYNKA+EQL   + K D S VVQLQGAIKFNGGGH NHSIFW+NL P+ E GGEPPH  LGWAID  FGS EAL+++M+A
Sbjct:    1 MALRTLASKNALSFALGGAARPSAASARGVTTVALPDLSYDFGALEPVISGEIMRLHHQKHHATYVVNYNKALEQLDAVVVKGDASAVVQLQGAIKFNGGGHFNHSIFWENLKPISE-GGEPPHGKLGWAIDEDFGSFEALVKRMNA 146          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.512e-35
Identity = 80/144 (55.56%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   37 MALRSLATRKAIGLGKSVGLGLRGLQT--VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            M  RSL   K +G  +S GL   G Q+   TLPDLPYDY AL P IS EIM LHH+KHHQ YV N N A+++L  A +  D + ++ LQ AIKFNGGGHVNHSIFW NLAP ++ GG  P   L  AI+  +GS+E LI+KMSA
Sbjct:    1 MLPRSLKLIKKVG--ESNGLRNFGSQSNSYTLPDLPYDYGALSPVISPEIMTLHHKKHHQTYVNNLNIALDKLSSASSAKDVAQMIALQSAIKFNGGGHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSA 142          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.552e-32
Identity = 71/127 (55.91%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   82 KSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            +S+  GL   Q  TLPDLPYDY ALEP IS EIMQLHH KHHQ YV N N A E+L +A  K D ST++ L  A++FNGGGH+NHSIFW+NL+     GGEP    L  AI+  FGS+E +  ++SA
Sbjct:   10 RSLRAGLWCRQKHTLPDLPYDYGALEPTISAEIMQLHHSKHHQTYVNNLNVAEEKLAEAKEKGDVSTIISLAPALRFNGGGHINHSIFWQNLS---ADGGEPEGELLA-AINRDFGSVENMKNQLSA 132          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MOUSE (Superoxide dismutase [Mn], mitochondrial OS=Mus musculus GN=Sod2 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 1.912e-30
Identity = 66/114 (57.89%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +T V LQ A+KFNGGGH+NH+IFW NL+P  +GGGEP    L  AI   FGS E   +K++A
Sbjct:   27 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVALQPALKFNGGGHINHTIFWTNLSP--KGGGEPKGELLE-AIKRDFGSFEKFKEKLTA 137          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30
Identity = 71/140 (50.71%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   52 LATRKAIGLGKSVGLGLRGL---QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            + +R   G G+ +   L  L   Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A
Sbjct:    1 MLSRAVCGTGRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTA 137          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.262e-30
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            +LPDLPYDY ALEP I+ +IMQLHH KHH  YV N N   E+  +AL K D +T V LQ A+KFNGGGH+NHSIFW NL+P  +GGGEP    L  AI   FGS E   +K++A
Sbjct:   27 SLPDLPYDYGALEPHINAQIMQLHHSKHHATYVNNLNVTEEKYHEALAKGDVTTQVALQPALKFNGGGHINHSIFWTNLSP--KGGGEPKGELLE-AIKRDFGSFEKFKEKLTA 137          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.262e-30
Identity = 71/140 (50.71%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   52 LATRKAIGLGKSVGLGLRGL---QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            + +R   G G+ +   L  L   Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A
Sbjct:    1 MLSRAVCGTGRQLAPALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKYKEKLTA 137          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CHLPN (Superoxide dismutase [Mn] OS=Chlamydia pneumoniae GN=sodA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30
Identity = 55/112 (49.11%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKM 456
            +LP+LPYDY ALEP IS EIM LHHQKHHQ Y+ N N A+++L  A  + + + ++ L+ A++FNGGGH+NHS+FW+ LAP+ +GGG+PP   L   I+  +G+++  ++K+
Sbjct:    7 SLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNELIALEPALRFNGGGHINHSLFWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKL 118          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30
Identity = 69/124 (55.65%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   94 LGLRGL-QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LG+ G+ Q  +LPDLPYDY AL+P I+ EIMQLHH KHH AY+ N N A E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A
Sbjct:   17 LGILGVRQKHSLPDLPYDYGALQPHINAEIMQLHHSKHHAAYLNNLNIAEEKYQEALAKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTA 137          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BOVIN (Superoxide dismutase [Mn], mitochondrial OS=Bos taurus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  112 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N A E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGE P   L  AI   FGS     +K++A
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVAEEKYREALEKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGE-PQGELLEAIKRDFGSFAKFKEKLTA 137          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM2_MAIZE1.009e-4763.27Superoxide dismutase [Mn] 3.2, mitochondrial OS=Ze... [more]
SODM_DICDI1.512e-3555.56Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_CHAFE4.552e-3255.91Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODM_MOUSE1.912e-3057.89Superoxide dismutase [Mn], mitochondrial OS=Mus mu... [more]
SODM_MACFA2.498e-3050.71Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_RAT3.262e-3057.89Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_MACNE3.262e-3050.71Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_CHLPN4.260e-3049.11Superoxide dismutase [Mn] OS=Chlamydia pneumoniae ... [more]
SODM_CAVPO4.260e-3055.65Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_BOVIN9.491e-3056.41Superoxide dismutase [Mn], mitochondrial OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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