CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P      +   S +  AID  FGS +A  ++ +A
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTSDVAQAIDDAFGSFDAFKEQFTA 119          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_HALMA (Superoxide dismutase [Mn] OS=Haloarcula marismortui GN=sod PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17
Identity = 45/105 (42.86%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPYDY ALEP IS +++  HH  HHQ YV     A E L +  +  D  +     G +  NG GH  H++FW+N+ P   GGGEP    L   I+  FGS E
Sbjct:    9 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGLESAEETLAENRDAGDFGSSAAAMGNVTHNGCGHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYE 110          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA-----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            LP LPYD  AL  AI  E M++HH +HHQ YV N N A           +E + + LN V  +    ++  I+ N GGH+NH+IFW+ ++P  +GGG+P   ++  AI+  FG+ E+
Sbjct:   35 LPPLPYDAGALSKAIDAETMRIHHDRHHQTYVDNLNTALKDQPNLQNLSIEAMLRDLNAVPEN----IRNTIRNNAGGHLNHTIFWQIMSP--DGGGQPT-GAIAQAINQTFGNFES 144          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-16
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            TLP+L Y Y ALEP    + M++HH KHHQAY+ N N A+E   + L K   + +  L         A++ N GGHVNH++FWK L       G     +L  AI+  FGS+EA
Sbjct:    4 TLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEA 112          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ----ALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+  +    +L ++  D S + + ++ A++ NGGGH+NHS FW  L P  +G        +G AI   FGS E    +  A
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKA 124          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ----ALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+  +    +L ++  D S + + ++ A++ NGGGH+NHS FW  L P  +G        +G AI   FGS E    +  A
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKA 124          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A
Sbjct:    3 IILPELPYAYDALEPQFDAETMSLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTA 119          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP LPY  +ALEP I    M +HH KHH  YVT  N A+       E+  +AL     +    ++ A++ NGGGH NH++FW+ L+P    GG  P   L  AI+  FGS +   +K +
Sbjct:    5 LPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSP---NGGGAPTGELADAINAEFGSFDQFKEKFA 120          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_ACIAM (Superoxide dismutase [Fe] OS=Acidianus ambivalens GN=sod PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  109 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            L+   LP LPY+  ALEP IS EI+ +H+  HH+ YV   N  V+++ + L    +S    +QG ++   FN  GH  HS++W+N+AP  +GGG+ P   +G  I+  +GS E
Sbjct:    7 LKKYELPPLPYNLDALEPYISKEIIDVHYNGHHRGYVNGANSFVDRVNKILKGEISSGQYDIQGLLRGLVFNINGHKLHSLYWQNMAPAGKGGGK-PGGVIGDLIEKQYGSFE 118          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.501e-16
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGG 381
            LP+LPY++ ALEP I  E M++HH KHH  YVT  N A+E        + + +  +D S    +Q A++ NGGGH+NHS+FW+ L P  E  G
Sbjct:    5 LPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIEGTDLENKSIEEIVANLD-SVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKG 96          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_STRP39.214e-1740.16Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_HALMA9.214e-1742.86Superoxide dismutase [Mn] OS=Haloarcula marismortu... [more]
SODM3_PLEBO9.214e-1739.32Superoxide dismutase [Mn] 3 (Fragment) OS=Plectone... [more]
SODM_PASHA1.203e-1641.23Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_LACLM1.572e-1640.50Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA1.572e-1640.50Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_STRP82.681e-1639.34Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_BACHD2.681e-1638.66Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODF_ACIAM2.681e-1638.94Superoxide dismutase [Fe] OS=Acidianus ambivalens ... [more]
SODM_STACA3.501e-1644.09Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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