CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++  +  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQTLINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTA 119          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15
Identity = 48/116 (41.38%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD-------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            T  LP+L Y Y ALEP    E M++HH KHHQAYV N N  +E+  + L K         T    + + A++ N GGHVNH++FWK L       G     +L  AI   FGS+EA
Sbjct:    2 TYQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVRNNLGGHVNHTLFWKGLKT-----GTTLQGALKDAIIRDFGSVEA 112          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G     ++   I   +GSL+A  ++ +
Sbjct:    5 LPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKG-----TVVDKIKEQWGSLDAFKEEFA 117          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            TLP+L Y Y ALEP      M++HH KHHQAYV N N A+E L         Q L K+      +L  AI+ N GGH+NHS+FWK+L       G     +L  AI   FGS+EA
Sbjct:    4 TLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLT-AIRNNVGGHLNHSLFWKSLKK-----GTTLQGALKDAIVRDFGSVEA 112          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQ 450
            LP+LPYDY+ALEP IS   ++ HH KHH AYV N+N AV   +   Q++  V  +       A  FN      NHS +W  + P   GGG  P  +L   I+  FGS +A ++
Sbjct:    5 LPNLPYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDLDNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKP---GGGGQPSGALADKINADFGSFDAFVE 114          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.269e-15
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  109 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK--------VDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            + +  LP L YDY  LEP I    + +HH KHH  YV N N  +E   +  NK        +DT    ++  A++ NGGGH  HS+FW+ ++P   GGGE P+  +   ID +F + + L  ++S
Sbjct:    1 MSSFQLPKLSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNKSLEELLCNLDT-LPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGE-PNGDVAKVIDYYFNTFDNLKDQLS 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            + LP+LPY Y ALEP    E M LHH KHH  YV N + A+E   ++ + L ++  D   + + ++ A+  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTDAALEKHPEIGENLEELLADVPKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTA 119          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFE 111          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFE 111          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFE 111          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_STRP11.019e-1538.52Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_HAEDU1.019e-1541.38Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODM_STAXY1.330e-1538.14Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODM_PASMU1.738e-1544.35Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODF_SYNY31.738e-1539.82Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODM2_BACCR2.269e-1536.00Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODM_STRPY2.964e-1537.19Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRAG2.964e-1540.71Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA52.964e-1540.71Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA32.964e-1540.71Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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