CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 45/114 (39.47%), Postives = 59/114 (51.75%), Query Frame = 1 
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L         + + K+D       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELITKLD-QVPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVD 111
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 45/114 (39.47%), Postives = 59/114 (51.75%), Query Frame = 1 
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L         + + K+D       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELITKLD-QVPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVD 111
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
[Close]
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.964e-15
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLE 110
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_SALTY2.964e-1539.47Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI2.964e-1539.47Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM1_STAAW2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB2.964e-1539.64Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA82.964e-1539.64Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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