CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_STAA8 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodM PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGG 381
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKG 96          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_STAA3 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain USA300) GN=sodM PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGG 381
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKG 96          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCCH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium chelonae GN=sodA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  193 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            H KHH AYV   N AV +L +A  K D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A
Sbjct:    2 HSKHHAAYVAGVNSAVAKLEEAREKGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTA 88          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCSC (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium scrofulaceum GN=sodA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  187 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LHH KHH  YV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA
Sbjct:    1 LHHSKHHATYVKGVNDAVAKLQEARANDDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSA 89          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCIT (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium intracellulare GN=sodA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.626e-13
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  187 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA
Sbjct:    1 LHHSKHHATYVKGVNDALSKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDRFRAQFSA 89          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL---FQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALI 447
            LP LP+DY+AL P I+ E ++ HH KHH AYV NYN AV+      Q +  V  +       A  FN      NHS +W ++ P    GG  P  +L   I   FGS E  +
Sbjct:    5 LPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDLDGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKP---NGGGAPTGALADKIAADFGSFENFV 113          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWK 351
            T  LP LPY Y++LEP    + M +HH +HHQAY+ N N            +E+L   LN +     + LQ     N GGH+NHS+FWK
Sbjct:    2 TYVLPSLPYSYNSLEPFFDEKTMIIHHTRHHQAYINNTNSILNGTHYENLLIEELISKLNILSIENKLALQN----NAGGHINHSLFWK 86          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            T TLP LPY   AL P +S E ++ H+ KHH  YVTN NK +    F+++   +   +++ +G I  N     NH+ +W +++P   GGGE P   L  AI+  FGS  A  ++ S
Sbjct:    2 TFTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEFESMTLEE--IIMKAKGGIFNNAAQVWNHTFYWHSMSP--NGGGE-PKGRLAEAINKSFGSFAAFKEQFS 112          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCMR (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium marinum GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.623e-13
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  193 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            H KHH  YV   N AV +L +A  K D ST++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +
Sbjct:    2 HSKHHATYVKGANDAVTKLEEARAKEDHSTILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFD 80          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.623e-13
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA-----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEP 387
            LP L Y Y ALEP I    M++HH +HHQ YV   N A           VEQL + +  +       + GA++ +GGGH NHS+ W  ++P   GGG P
Sbjct:    5 LPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPG----IHGAVRNHGGGHANHSLLWTVMSP--SGGGRP 97          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM2_STAA85.590e-1441.67Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAA35.590e-1441.67Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM_MYCCH9.535e-1443.33Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCSC1.245e-1343.48Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCIT1.626e-1342.39Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_SYNE72.124e-1338.39Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODM_BUCBP2.774e-1340.45Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODF_LEGPH2.774e-1337.07Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODM_MYCMR3.623e-1346.34Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_BORPE3.623e-1339.39Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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