CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.054e-12
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            TLP LPY   AL P IS E ++ H+ KHHQ YVTN N  +         +    +V+      FN    V NH+ +W +L+P   GGGE P  +L  AI   +GS++A
Sbjct:    4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPG--TEFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNSLSP--NGGGE-PSGALADAIKAKWGSVDA 106          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  193 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            H KHH  YV   N AV +L +A  + D S+++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A
Sbjct:    2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHA 88          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-12
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEAL 444
            LP+L YDY A+EP I  + M++HH KHH  +V N N  +E++ + ++  D S ++        + Q  I+ N GG+ NH+++++ L P   G  +         I+  FGSL+ L
Sbjct:    4 LPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGK-IHLTDVSNILKNIHDFPEEFQTLIRNNAGGYSNHTLYFRTLRP---GNKDNLFEKFKDDINAAFGSLDVL 114          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STROR (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus oralis GN=sodA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            I  E M LHH KHHQAYV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E
Sbjct:    2 IDAETMHLHHDKHHQAYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFE 94          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQK 453
            LPDLPYD  + +P  + E    HH KHH AYV N N  ++   + L K D   ++    Q   A  FN    + NHS FW ++ P  +GGG+P    L   I+  FGS E   ++
Sbjct:   16 LPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDK-EELQKKDLEEIIEWSSQNSNAAIFNNAAQIWNHSFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEGFCEQ 126          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            T  L  LPY   AL P IS E ++ HH KH + YV N NK +  +       D +T+VQ  +G I  N G  +NH++++    P   G G  P   LG AID  FGS E
Sbjct:    2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFE 105          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 44/117 (37.61%), Postives = 57/117 (48.72%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LP+LPYDY AL P +S E ++ HH KHH AYVTN NK  E+    L+ +    +V+        +  N G H NH  FWK +     GGG      L  AI +  G  +      SA
Sbjct:    5 LPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEE--AGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHFWKWMK--KGGGGTSLPGKLDAAIKSDLGGYDKFRADFSA 117          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 44/109 (40.37%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKF--NGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEAL 444
            LPDLPY Y ALEP IS +IM+LHH+K              Q  +   +  T+ V     ++ F     GH+NHS+FW+NLAP    GG+     L  AID  FG L+ L
Sbjct:    5 LPDLPYAYDALEPYISRQIMELHHKKTSSDLCE-----CAQHCRGCLRHSTAVVGGFDLSLFFILTTLGHINHSLFWQNLAPAAGAGGQLKPGPLKDAIDQTFGGLDNL 108          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY+ +ALEP IS E ++ HH KHH  YV N N  +    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +
Sbjct:    5 LPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGT-EFEGKSLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFD 105          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRMT (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus mitis GN=sodA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E
Sbjct:    2 IDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFE 94          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODF_BORPE1.054e-1238.89Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODM_MYCSZ1.798e-1241.11Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_BORBU3.067e-1233.04Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODM_STROR4.006e-1241.24Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_RICFE4.006e-1236.52Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_PORGI4.006e-1239.45Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODF_RHIME5.232e-1237.61Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODM_AGABI6.833e-1240.37Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODF_PSEAE8.924e-1239.05Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODM_STRMT1.166e-1140.21Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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