CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:34..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRPA (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus parasanguis GN=sodA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            I  E M LHH KHHQ YV N N A+E+       L   L  V+ S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E
Sbjct:    2 IDEETMHLHHDKHHQTYVNNVNAALEKHPEIGEDLESLLADVE-SIPADIRQAVINNGGGHLNHALFWELMTPEQTA----PSAELAAAIDATFGSFE 94          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +
Sbjct:    5 LPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFD 105          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCPH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium phlei GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.597e-11
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  193 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            H KHH  YV   N A+ +L +A    D   +   +  + F+ GGHVNH+I+WKNL+P    GG+ P   L  AID  FGS +
Sbjct:    2 HSKHHATYVKGVNDAIAKLEEARANGDHGAIFLHEKNLAFHLGGHVNHTIWWKNLSP---HGGDKPTGDLAAAIDDQFGSFD 80          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11
Identity = 41/105 (39.05%), Postives = 52/105 (49.52%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  LAP    GG+P   +L  AI+  FGS +
Sbjct:    5 LPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLAP--NAGGQPT-GALADAINAAFGSFD 105          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LP+LPY+  + +P  + E  + HH KHH AYV N N  ++   + L K +   ++    Q Q    FN    V NH+ FW ++ P   GGG+P    L   I+  FGS E   ++  A
Sbjct:   16 LPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDK-EELQKKNLEEIIDWSSQNQNIAIFNNAAQVWNHTFFWHSIKP--NGGGKPSGKILK-QINEDFGSFEEFCEQFKA 129          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP LPY   ALEP IS E ++ HH KHH  YV   N  +    +  NK     V    G +  N     NH+ +W +L+P    GG  P  ++  AI+  +GS +A  + ++
Sbjct:    4 LPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGT-KFENKSLEEIVCSSDGGVFNNAAQIWNHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALN 111          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_STRPA1.522e-1140.82Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_PSEPK1.988e-1139.05Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODM_MYCPH2.597e-1141.46Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_PSEPU4.429e-1139.05Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_RICBR7.555e-1133.90Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_PSEHT7.555e-1133.93Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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