CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CHLMU (Superoxide dismutase [Mn] OS=Chlamydia muridarum GN=sodA PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.152e-29
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQ 450
            LPDLPYDY ALEP IS EIM LHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGGGH+NHS+FW+ LAP ++GGG PP   L   I+  +GS +  ++
Sbjct:    8 LPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDLTGLIAINPALRFNGGGHINHSLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLK 116          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   97 GLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            G+RG  T  LP LPYDY+ALEP I  EIM+LHHQKHHQ YV N N A EQL +A +K DT+ ++QL  A++FNGGGH+NH+IFW+NL+P        P   L  AI++ + SLE   ++++
Sbjct:   14 GVRGKHT--LPKLPYDYAALEPIICREIMELHHQKHHQTYVNNLNAAEEQLEEAKSKSDTTKLIQLAPALRFNGGGHINHTIFWQNLSP----NKTQPSDDLKKAIESQWKSLEEFKKELT 128          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.790e-28
Identity = 58/112 (51.79%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQ 450
            +LP+L Y++SA EP ISG+I ++H+ KHHQ YV N N ++EQ  +A +K +   +V L+ AI FNGGG++NH ++WKNLAPV +GGG+PP   S LG  I   FGSL+ LI+
Sbjct:   37 SLPELDYEFSATEPYISGQINEIHYTKHHQTYVNNLNASIEQAVEAKSKGEVKKLVALEKAINFNGGGYLNHCLWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIE 148          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.338e-28
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            TLPDLP+DY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNGGGH+NHSIFW NLA   + GGEP    +   I   FGSL+ L +++S
Sbjct:   27 TLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA---KDGGEPSKELMD-TIKRDFGSLDNLQKRLS 135          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_HORSE (Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.053e-28
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  112 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            Q  +LPDL YDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NH+IFW NL+P   GGGEP    L  AI   FGS +   +K++A
Sbjct:   24 QKHSLPDLQYDYGALEPYINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHTIFWTNLSP--NGGGEPKGKLLD-AIKRDFGSFDKFKEKLTA 137          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_YEAST (Superoxide dismutase [Mn], mitochondrial OS=Saccharomyces cerevisiae GN=SOD2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.987e-28
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   55 ATRKAIGLGKSVGLGLRGLQT----VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV--------DTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQ 450
            A   A  L K  GL L         VTLPDL +D+ ALEP ISG+I +LH+ KHHQ YV  +N AV+Q FQ L+ +        +   ++ +Q  IKF+GGG  NH +FW+NLAP  +GGGEPP  +L  AID  FGSL+ LI+
Sbjct:    3 AKTAAANLTKKGGLSLLSTTARRTKVTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDLLAKEPSPANARKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIK 145          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.883e-28
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLP+LPYDYSALEP ISGEIM+LHH KHH+AYV   N A+++L +A +K D   + +L+  + FN  GHVNHS+FWKN+AP      E P   LG AID  FGS + +  + +A
Sbjct:    4 TLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKLEKDLAFNLAGHVNHSVFWKNMAP-KGSAPERPTDELGAAIDEFFGSFDNMKAQFTA 116          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.979e-27
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQ 450
            LP LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGG H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++
Sbjct:    8 LPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLK 116          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.585e-27
Identity = 60/114 (52.63%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            +LPDLPYDY ALEP I+ +IM+LHH KHH AYV N N   E+  +AL + D +  V LQ A+KF GGGH+NH+IFW NL+P   GGGEP    L  AI   FGS +   ++++A
Sbjct:    8 SLPDLPYDYGALEPHINAQIMELHHSKHHAAYVNNLNATEEKYREALARGDVTAHVALQPALKFKGGGHINHTIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTA 118          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.409e-27
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   76 LGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            +GK+  L  + L+ V LPDLPYDY ALEP +S EIMQ+HH KHH AYV   N+A E++ +AL K DT   V     + FN GGH+NH++FW+ L  V   G   P+S L  AI   FGSLE +I K++A
Sbjct:   13 VGKNYCLNTQRLKHV-LPDLPYDYGALEPILSAEIMQVHHGKHHAAYVNALNQAEEKVKEALAKGDTQAAVAGTKLMNFNTGGHINHTLFWEGLTAVKNSG--EPNSELMTAIKKDFGSLETMIDKLNA 138          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_CHLMU6.152e-2951.38Superoxide dismutase [Mn] OS=Chlamydia muridarum G... [more]
SODM_DROME1.049e-2852.07Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_CANAL1.790e-2851.79Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]
SODM2_CAEEL2.338e-2854.87Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_HORSE3.053e-2853.85Superoxide dismutase [Mn], mitochondrial OS=Equus ... [more]
SODM_YEAST3.987e-2847.22Superoxide dismutase [Mn], mitochondrial OS=Saccha... [more]
SODM_PROFR8.883e-2852.63Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODM_CHLTR1.979e-2750.46Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_RABIT2.585e-2752.63Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_ONCVO4.409e-2749.61Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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