CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:34..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_EPTST (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Eptatretus stoutii PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.782e-24
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            IS EIMQLHH KHH AYV N N   E+L +AL K D +T V LQ A +FNGGGH+NHSIFW+NL+P   GGG+P    L  AI+  FGS++ L +K+ A
Sbjct:    2 ISAEIMQLHHSKHHAAYVNNVNVVEEKLAEALGKGDVNTQVSLQPAFRFNGGGHINHSIFWRNLSP--SGGGQPCGDLLK-AIENDFGSVDKLREKLVA 97          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL YDY ALEP ISG+I +LHH KHH AYV   N AV +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHAAYVKGVNDAVAKLDEARANGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PETMA (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Petromyzon marinus PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.264e-23
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            IS  IMQLHH KHH  YV N N A ++L +A+ K D +  + LQ AIKFNGGGH+NHSIFW NL+P    GG  P   L  AI+T FGS   L +KMSA
Sbjct:    2 ISANIMQLHHSKHHATYVNNLNVAEQKLAEAVAKGDVTAEIALQPAIKFNGGGHINHSIFWTNLSP---NGGGAPTGDLQKAIETDFGSFTKLQEKMSA 97          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCLE (Superoxide dismutase [Mn] OS=Mycobacterium leprae GN=sodA PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.264e-23
Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL +DY+ALEP ISGEI ++HH KHH AYV   N A+ +L +A  K D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L   ID  FGS +    + SA
Sbjct:    5 TLPDLDWDYAALEPHISGEINEIHHTKHHAAYVKGVNDALAKLDEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGGLATDIDETFGSFDKFRAQFSA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_TETPY (Superoxide dismutase [Fe] OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.862e-23
Identity = 54/107 (50.47%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  133 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALI 447
            L Y+YS LEP +S  ++  HH KHHQAYV N N   EQ+  A  + D   +  LQ A++FN GGHVNH I+W NLAPV  GGG  P  HS L  AI   +GS E  I
Sbjct:    1 LNYEYSDLEPVLSAHLLSFHHGKHHQAYVNNLNATYEQIAAATKENDAHKIATLQSALRFNLGGHVNHWIYWDNLAPVKSGGGVLPDEHSPLTKAIKEKWGSYENFI 107          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCSM (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 5.044e-23
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCS2 (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.044e-23
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL YDY ALEP ISG+I +LHH KHH  YV   N A+ +L +A    D + +   +  + F+ GGH+NHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A
Sbjct:    5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.503e-22
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLT 122          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.503e-22
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ--------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LPDL Y Y ALEP I  + M++HHQKHH AYVTN N A+E+ +  L+ V+   +++        +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG  +AL +K++
Sbjct:    7 LPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEK-YPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFQALKEKLT 122          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSA 115          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_EPTST7.782e-2456.57Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_MYCFO1.016e-2349.12Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_PETMA2.264e-2355.56Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_MYCLE2.264e-2349.12Superoxide dismutase [Mn] OS=Mycobacterium leprae ... [more]
SODF_TETPY3.862e-2350.47Superoxide dismutase [Fe] OS=Tetrahymena pyriformi... [more]
SODM_MYCSM5.044e-2346.49Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_MYCS25.044e-2346.49Superoxide dismutase [Mn] OS=Mycobacterium smegmat... [more]
SODM_THET82.503e-2245.00Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET22.503e-2245.00Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_MYCPA3.269e-2246.49Superoxide dismutase [Mn] OS=Mycobacterium paratub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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