CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL +DY+ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA
Sbjct:    5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            T  LP+L Y Y ALEP I+ EIM+LHH KHH  YV   N A+E+L +A    +   VV  L   + FN GGH NHSIFWKNL+P   GGGEP   +L  AI   FGS E      SA
Sbjct:    2 TYALPELDYAYDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVVTALSKDLAFNLGGHTNHSIFWKNLSP--NGGGEPT-GALAEAIAKEFGSFEKFKDHFSA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFD 107          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFD 107          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 7.284e-22
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            TLPDL +DY ALEP ISG+I ++HH KHH  YV   N A+ +L +A    D + +   +  + F+ GGHVNHS++WKNL+P    GG+ P   L  AID  FGS +    + SA
Sbjct:    5 TLPDLDWDYEALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSLWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSA 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.513e-22
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            I+ +IMQLHH +HH AYV N N   E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A
Sbjct:    2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTA 97          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.242e-21
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP+L Y Y ALEP I    M++HHQKHH AYVTN N A+E+         + L +  T+    +Q A++ NGGGH+NHS+FW+ L P   GG + P   L  AID  FG   AL +K++
Sbjct:    7 LPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTP---GGAKEPVGELKKAIDEQFGGFAALKEKLT 122          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_PYRAE (Superoxide dismutase [Fe] OS=Pyrobaculum aerophilum GN=sod PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.052e-20
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            TLP LPY Y+ALEP IS EIMQLHHQKHHQ YV   N A+E+L +         +  +   + F+  GH+ HSIFW N+AP  +GGG+ P   +   I+  FGS E   ++ S
Sbjct:    8 TLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGK-PGGKIADLINKFFGSFEKFKEEFS 119          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 97.0561 bits (240), Expect = 3.997e-20
Identity = 54/120 (45.00%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LP+LPY Y ALEP I  E M +HH KHH  YVTN NKAVE      NK     V  L         A++ NGGGH NH +FW  L+P   GGGEP   +L   I++ FGS +   ++ +A
Sbjct:    5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAA 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 6.817e-20
Identity = 54/122 (44.26%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQK 453
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQK 121          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_MYCAV3.269e-2246.49Superoxide dismutase [Mn] OS=Mycobacterium avium G... [more]
SODM_CORDI4.270e-2250.43Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODF_MYCTU4.270e-2250.00Superoxide dismutase [Fe] OS=Mycobacterium tubercu... [more]
SODF_MYCBO4.270e-2250.00Superoxide dismutase [Fe] OS=Mycobacterium bovis G... [more]
SODM_MYCLP7.284e-2245.61Superoxide dismutase [Mn] OS=Mycobacterium lepraem... [more]
SODM_PIG9.513e-2253.54Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_THEAQ1.242e-2144.54Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODF_PYRAE1.052e-2046.02Superoxide dismutase [Fe] OS=Pyrobaculum aerophilu... [more]
SODM_BACSU3.997e-2045.00Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_DEIRA6.817e-2044.26Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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