CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:34..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.519e-19
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  109 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPH----SSLGWAIDTHFGS 432
            +   TLP+LPYDYSAL P IS EI++LHH KHH AYV   N  +EQL +A +K    ++  L+  + F+  GH+ HSI+W N+    +GGGEP        L  AI   FGS
Sbjct:    1 MSVYTLPELPYDYSALAPVISPEIIELHHDKHHAAYVKGANDTLEQLAEARDKETWGSINGLEKNLAFHLSGHILHSIYWHNM--TGDGGGEPLDKDGVGELADAIAESFGS 110          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLP LPY Y ALEP I  + M++HH KHHQ Y+ N N A+E    A   V+       S    LQG ++ NGGGH NHS+FW  ++P   GGGE P   +  AID   G  E
Sbjct:    4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFE 112          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLP LPY Y ALEP I  + M++HH KHHQ Y+ N N A+E    A   V+       S    LQG ++ NGGGH NHS+FW  ++P   GGGE P   +  AID   G  E
Sbjct:    4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFE 112          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEAL 444
            T TLP+LPY Y ALEP I  E M LHH KHH  YVTN N           K+VE L   +N +       ++ A++ NGGGH NH+ FW+ +AP    GG+P   ++  AID  FGS + +
Sbjct:    2 TYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVENLISDMNAIPE----DIRTAVRNNGGGHANHTFFWEIMAP--NAGGQPT-GAIKEAIDETFGSFDEM 115          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.591e-19
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            TLP LPY Y ALEP I  + M++HH KHHQ YV   N A          VE+L  A+ ++  S    L+GA+  +GGGH NHS+FW  ++P  +GGGE PH  L  AI +  G  +A
Sbjct:    4 TLPALPYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEWPVEKLVGAVKQLPES----LRGAVTNHGGGHANHSLFWTVMSP--QGGGE-PHGQLAQAIASQLGGFDA 113          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.591e-19
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            TLP L Y Y+ALEP I  + M++HH KHHQ Y+ N N A+E      +  +AL +   S    L+G ++ NGGGH NHS+FWK L P   GGGE P  +L  AI +  G L+
Sbjct:    3 TLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFANEPVEALLQKLDSLPENLRGPVRNNGGGHANHSLFWKVLTP--NGGGE-PKGALADAIKSDIGGLD 111          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.419e-19
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFA 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.771e-19
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V        +++GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNA 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 5.771e-19
Identity = 54/119 (45.38%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELAEAINKKFGSFTAFKDEFS 120          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.537e-19
Identity = 54/119 (45.38%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELADAINKKFGSFTAFKDEFS 120          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODF_STRCO1.519e-1945.54Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]
SODM_XANCP1.984e-1945.54Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC81.984e-1945.54Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_ENTFA1.984e-1942.98Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_PSEPU2.591e-1944.44Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODF_METJ2.591e-1945.54Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODM1_BACAN4.419e-1941.46Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_LISIV5.771e-1938.21Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_BACCA5.771e-1945.38Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_BACST7.537e-1945.38Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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