CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:34..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.537e-19
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            L  LPYDY+ALEP I  + M+LHH KHH  YV N N           ++V+ L Q LN+V  +    ++  I+ NGGGHVNH++FW+ +AP  + GG P   ++  AID  FGS +A  Q+ +
Sbjct:   46 LDPLPYDYAALEPYIDAQTMRLHHDKHHATYVNNINETLKAYPDLQKQSVDSLIQNLNQVPEA----IRTKIRNNGGGHVNHTMFWQIMAP--KAGGTPT-GAVAKAIDQTFGSFDAFKQQFN 161          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PALVU (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Palinurus vulgaris PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.844e-19
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            IS  IMQ+HH KHHQAY+ N     E+L QA    D + +  L  AIKFNGGGH+NH+IFW N+AP    GGEP    +  AI   FGS +A   K S
Sbjct:    2 ISEMIMQIHHTKHHQAYINNLKACTEKLKQAEQANDVAAMNALLPAIKFNGGGHINHTIFWTNMAP--SAGGEPA-GPVADAITKEFGSFQAFKDKFS 96          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 9.844e-19
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP LPY Y ALEP I  +  ++HH KHH  YVTN N AVE    A   ++       +     Q A++ NGGGH NH++FW+ +AP   GG   P   +  AID  FGS +A  ++ +
Sbjct:    5 LPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFADKDINDLIAMLDALPADKQTAVRNNGGGHANHTLFWEVIAP---GGSNTPVGEVAKAIDAKFGSFDAFKEEFA 119          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.193e-18
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LP LPY+Y+ALEP I  EIM+LHHQKHH  YV   N A+E++ + L       V  +     FN  GH+ H+IFW N+AP  +GGG  P   +   I+  FG  E      SA
Sbjct:    9 LPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGG-TPGGRVADLIEKQFGGFEKFKALFSA 120          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.864e-18
Identity = 50/112 (44.64%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            LP LPY Y ALEP I    M++HH KHHQ YV N N A+      EQ  ++L +       +L+  +  NGGGH NHS+FW  ++P  +GGG  P   LG AID   G  EA
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAEQPVESLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSP--QGGGR-PDGDLGRAIDEQLGGFEA 113          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_METTH (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum GN=sod PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.864e-18
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP+LPY Y ALEP IS E + +HHQKHHQAYV   N  + +L +A    ++ T V ++ A+K   F+ GG+V H  FW N+ P  E GGE P   L   I+  FGS E   ++ S
Sbjct:   11 LPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEAR---ESDTDVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PSGKLAEYIEKDFGSFERFRKEFS 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.741e-18
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFE 111          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.741e-18
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  118 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFE 111          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.741e-18
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW  L+P    GG  P  +L  AI++ FG+ +   +K +A
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNA 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_HALSA (Superoxide dismutase [Mn] 1 OS=Halobacterium salinarium GN=sod1 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 3.741e-18
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPYDY ALEP IS +++  HH  HHQ YV  +N A E L +     D ++     G +  NG GH+ H++FW++++P    GG+ P  +L   I   FGS E
Sbjct:    6 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGWNDAEETLAENRETGDHASTAGALGDVTHNGSGHILHTLFWQSMSP---AGGDEPSGALADRIAADFGSYE 107          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM1_PLEBO7.537e-1942.28Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODM_PALVU9.844e-1950.00Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_KLEPL9.844e-1940.68Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODF_AERPE2.193e-1843.36Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM_PSEAE2.864e-1844.64Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODF_METTH2.864e-1844.35Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODM_STRR63.741e-1843.36Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN3.741e-1843.36Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_LISMO3.741e-1839.02Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM1_HALSA3.741e-1840.95Superoxide dismutase [Mn] 1 OS=Halobacterium salin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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