CN187730
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18 Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462 T LP LPY Y ALEP E M+LH+ KHH YVT N+AV E+ + L S ++GA++ +GGGH NH++FW L+P GG P L AI++ FG+ + +K +A Sbjct: 2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNA 121
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PARCL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Parastichopus californicus PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18 Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 166 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462 I G+IM+LHH+KHH Y N N A E+L A + D ++ LQ A+KFNGGG +NH IFW NL+P +GGG P L AI+ FGS ++ ++A Sbjct: 2 IIGDIMELHHKKHHATYTNNLNAAEEKLAAAHAEGDIGGMIALQPALKFNGGGFINHCIFWTNLSP--QGGG-VPEGDLADAINRDFGSFDSFKTTLTA 97
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18 Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441 LP LPY YSALEP IS +IM LHH KHHQ+YV NKA +L +A + + + + F+G GH HSIFW ++ H G P +L ID FGS A Sbjct: 82 LPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSM---HPNGKRRPTGALFQMIDLSFGSYSA 184
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17 Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 136 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459 PY Y ALEP E M +HH KHH Y+TN N K+VE+L LN+V + ++ A++ NGGGH NH+ FW L+P GGG+P L AI+ FGS +A ++ + Sbjct: 25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFA 136
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_HALSA (Superoxide dismutase [Mn] 2 OS=Halobacterium salinarium GN=sod2 PE=3 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 4.136e-17 Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1 Query: 124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438 LP LPYDY ALEP IS +++ HH HHQ+YV N A E L + D ++ G + NG GH H++FW++++P +GGGE P +L I FGS E Sbjct: 6 LPSLPYDYDALEPHISEQVVTWHHDTHHQSYVDGLNSAEETLAENRETGDHASTAGALGDVTHNGCGHYLHTMFWEHMSP--DGGGE-PSGALADRIAADFGSYE 107
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17 Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441 TLP+L Y Y+ALEP + M++HH KHHQAYV N N A+E L L ++ ++ + +GA++ N GGH NHS+FWK+L G +L AI+ FGS++A Sbjct: 4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDA 113
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17 Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 1 Query: 124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462 LP LPYDY +LEP + M +HH KHHQ YV N N A+++ + L VD + V + I+ NGGGH NHS FWK + G P+ + AI+ FGS++ + K +A Sbjct: 5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNA 124
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17 Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459 LP+LPY Y ALEP IS E +++HH+KHHQAYV N + +L A + + + F+ GG+V H FW N+ P E GGE P L I+ FGS + ++ S Sbjct: 8 LPELPYPYDALEPYISEEQLRIHHEKHHQAYVDGANGVLRKLDDARENGEEVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PDGRLAEYIEKDFGSFQRFKKEFS 118
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17 Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1 Query: 124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGE 384 LP+LPY Y ALEP I + M++HH KHH YVT N AVE ++ S +Q A++ NGGGH+NHS+FW+ L+P E GE Sbjct: 5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGE 97
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17 Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1 Query: 124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGE 384 LP+LPY Y ALEP I + M++HH KHH YVT N AVE ++ S +Q A++ NGGGH+NHS+FW+ L+P E GE Sbjct: 5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGE 97 The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 186
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bpback to top |