CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:34..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  115 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            T  LP LPY Y ALEP    E M+LH+ KHH  YVT  N+AV       E+  + L     S    ++GA++ +GGGH NH++FW  L+P    GG  P   L  AI++ FG+ +   +K +A
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNA 121          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PARCL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Parastichopus californicus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  166 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            I G+IM+LHH+KHH  Y  N N A E+L  A  + D   ++ LQ A+KFNGGG +NH IFW NL+P  +GGG  P   L  AI+  FGS ++    ++A
Sbjct:    2 IIGDIMELHHKKHHATYTNNLNAAEEKLAAAHAEGDIGGMIALQPALKFNGGGFINHCIFWTNLSP--QGGG-VPEGDLADAINRDFGSFDSFKTTLTA 97          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            LP LPY YSALEP IS +IM LHH KHHQ+YV   NKA  +L +A    +   +   +  + F+G GH  HSIFW ++   H  G   P  +L   ID  FGS  A
Sbjct:   82 LPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSM---HPNGKRRPTGALFQMIDLSFGSYSA 184          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  136 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            PY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFA 136          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM2_HALSA (Superoxide dismutase [Mn] 2 OS=Halobacterium salinarium GN=sod2 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 4.136e-17
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLE 438
            LP LPYDY ALEP IS +++  HH  HHQ+YV   N A E L +     D ++     G +  NG GH  H++FW++++P  +GGGE P  +L   I   FGS E
Sbjct:    6 LPSLPYDYDALEPHISEQVVTWHHDTHHQSYVDGLNSAEETLAENRETGDHASTAGALGDVTHNGCGHYLHTMFWEHMSP--DGGGE-PSGALADRIAADFGSYE 107          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  121 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEA 441
            TLP+L Y Y+ALEP    + M++HH KHHQAYV N N A+E L   L ++    ++        + +GA++ N GGH NHS+FWK+L       G     +L  AI+  FGS++A
Sbjct:    4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDA 113          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            LP LPYDY +LEP +    M +HH KHHQ YV N N A+++    + L  VD +  V        +   I+ NGGGH NHS FWK +       G  P+  +  AI+  FGS++ +  K +A
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNA 124          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMS 459
            LP+LPY Y ALEP IS E +++HH+KHHQAYV   N  + +L  A    +   +      + F+ GG+V H  FW N+ P  E GGE P   L   I+  FGS +   ++ S
Sbjct:    8 LPELPYPYDALEPYISEEQLRIHHEKHHQAYVDGANGVLRKLDDARENGEEVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PDGRLAEYIEKDFGSFQRFKKEFS 118          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGE 384
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGE 97          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  124 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGE 384
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGE 97          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_LISIN4.886e-1839.84Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM_PARCL8.334e-1846.46Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_BACSU8.334e-1845.28Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]
SODM1_BACCR3.167e-1740.34Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM2_HALSA4.136e-1742.86Superoxide dismutase [Mn] 2 OS=Halobacterium salin... [more]
SODM_HAEIN5.402e-1740.87Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_CHLRE5.402e-1738.52Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODF_METTM5.402e-1740.18Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODM_STAES7.055e-1745.16Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ7.055e-1745.16Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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