CN187729

Overview
NameCN187729
Unique NameCN187729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2617 contig Csv1_Contig2617:619..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.850e-24
Identity = 54/142 (38.03%), Postives = 88/142 (61.97%), Query Frame = -3
Query:  295 RMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQE-RLSVATVYSVRYDGEVYPASSLISEKT----PPLFRRMRIEEYFRSRYARELRGK 705
            +++ YPPCP P+ V GL  H+DA  + +L Q ++V GLQ+ KDG+W+ V P+  + +VN+GD LE+ITNG Y+S+EHR +  +  E R+S+A+ Y+   D  ++PA  LI ++        + R   E+Y +   A + + K
Sbjct:  158 KVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAK 299          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = -3
Query:  331 LNIKDEEMREFF--ENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEY 762
            L ++  EM E    E+ V  +++NYYPPCP+P+  +G+  H+D + +T+L+  NEV   QV KDG W  V  +P+A IV+IGD +EI++NG Y+S+ HR  VN  + R+S         + EV P  +LI+E  PP F+  + ++Y
Sbjct:  198 LGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVP-NEV---QVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVNKYKTRMSWPVFLEPSSEHEVGPIPNLINEANPPKFKTKKYKDY 339          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = -3
Query:  370 RMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEK 705
            +++ YPPCP+P+ + GL  H+DA  + +L Q ++V GLQ+ KD +WI V PL  + +VNIGD LE+ITNG Y+S+ HR V  +   R+S+A+ Y+   D  ++PA +L+ ++
Sbjct:  162 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKE 273          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = -3
Query:  331 VQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEY 717
            +  +++NYYPPCP+P+  +G+  H+D +A+TIL+  NEV+GLQV KD  W  V  +P+A I++IGD +EI++NG Y+S+ HR  VN  + R+S         +    P S LI+++ P  F+  + ++Y
Sbjct:  200 IYMLKINYYPPCPRPDLALGVVAHTDMSAITILVP-NEVQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPPELLTGPISKLITDENPAKFKTKKYKDY 327          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 64/150 (42.67%), Postives = 85/150 (56.67%), Query Frame = -3
Query:  331 EVLNIKDEEMREFF-ENGVQA---MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEY 768
            EVL  K  +   FF EN V+    +RMN YPPCP+P +V GL PH+D+  LTIL Q ++V GLQ+ KD +WI V P P A I+NIGD  +  +NG Y+S+EHR + N   ER S A      YD  +  +S        P +R     E+
Sbjct:  171 EVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQ-DQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVIECSSD------RPAYRNFSFREF 313          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23
Identity = 60/150 (40.00%), Postives = 90/150 (60.00%), Query Frame = -3
Query:  271 MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVN-SVQERLSVATVY--SVRYDGEVY-PASSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 708
            M  +Y+PPCP+P+   G S HSD + LT+LL  N +EGLQV ++G W  V  +P A I+NIGD L++ITN  + S++HR + N + + R+SVA  +   V+ +  VY P   L+SE+ PP +R   I +Y      + L G S L   ++
Sbjct:  221 MLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDN-IEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPKYRETTIRDYATYFNGKGLGGTSALLDFKV 369          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 60/152 (39.47%), Postives = 94/152 (61.84%), Query Frame = -3
Query:  271 GVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQV-KKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVY-SVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 720
            G  A+R+N+YP CP+PE+ MGL+ H+D+  LTIL Q N   GLQV +++  W+ V P P   +VNIGD   I++NG   S+ HRA VN  + R+S+A ++     D ++ P S L     P L+R +  +EY + +Y  E+  K+ +D++R+
Sbjct:  203 GRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDVQIAPISKLTGPAEPSLYRSITWKEYLQIKY--EVFDKA-MDAIRV 350          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 48/135 (35.56%), Postives = 84/135 (62.22%), Query Frame = -3
Query:  295 YPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKT--PPLFRRMRIEEYFRSRYARELRGK 693
            YPPCP+ + + GL  H+DA  + +L Q ++V GLQ+ KD +WI V P+  + ++N+GD LE+ITNG Y+S+ HR V  +   R+S+A+ Y+   D  +YPA +L+ ++     ++ +   ++Y +   A + + K
Sbjct:  162 YPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVAQTDGTRMSIASFYNPGNDAVIYPAPALVEKEVEEKEVYPKFVFDDYMKLYAALKFQAK 296          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  331 FFENG---VQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQ--VKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEY 732
            +F+N    +Q M  NYYPPCP P   +G   H D   +T+L Q  ++ GLQ  + KD  WI V P+P AF+VN+G TL++ITN  +    HR V +  ++R+S+AT+    Y   + PA  L+++  PPL++     E+
Sbjct:  186 YFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQ--DLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGPDYSCTIEPAKELLNQDNPPLYKPYSYSEF 322          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = -3
Query:  373 LNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISE 762
            L +  +  R FFE     MR+N+YPPC  P+  +G  PH D ++LTIL Q + V GLQV  D +W  + P P AF+VNIGDT   ++NG ++S  HRAVVN    R S+A     + D  V P S ++ +
Sbjct:  207 LGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQ-DHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEK 335          
The following BLAST results are available for this feature:
BLAST of CN187729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO1_ARATH7.850e-2438.031-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
FLS_SOLTU1.025e-2339.73Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
ACCO2_DORSP1.339e-2342.861-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
FLS_PETCR1.749e-2339.53Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
G2OX8_ARATH2.983e-2342.67Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
ACCH2_ARATH3.896e-2340.001-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX4_ARATH5.088e-2339.47Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
ACCO_DIOKA6.645e-2335.561-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
HY6H_HYONI8.679e-2338.13Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
GAOX2_ARATH8.679e-2342.31Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187729 ID=CN187729; Name=CN187729; organism=Citrus sinensis; type=EST; length=770bp
CTTTTTTGAATAGCACCACTATATATCATGGGAAGATTCCAGGCATAAGT
CTGCAATTCTTAAGATTCTTACATGGTCTATTCAGTATCTCAAATGATAG
AGCTATTAGAAACACAACGACCCTAGCATAGCAGGTTATACCACAGTATT
CATAGAACTTATTTCTTATTTTCAGTTCCACACACAATCTTAATGGCAAG
GCCCTTCAGAGTTTTTGTACCAAACTCTTTAGTTATCCGAAATAAACTTA
TACTAGCCTTGACCATGTTGAATTCTCAGGGAATCCAGCTGAGATTTTCC
CCTAAGCTCACGAGCATACCGGCTCCTAAAGTATTCTTCAATTCTCATTC
TTCTAAACAAAGGAGGAGTTTTTTCAGAGATCAAACTGGAGGCAGGATAC
ACTTCACCATCATATCTCACTGAGTAAACTGTGGCAACGGAAAGTCTTTC
CTGTACAGAGTTTACAACTGCACGATGCTCAATGCTACGGTATGTCCCAT
TGGTTATAATCTCCAATGTGTCTCCAATGTTGACAATGAAAGCATCCGGG
AGTGGGGTAACAGGAATCCACTTTCCATCCTTCTTTACCTGGAGACCCTC
CACTTCATTAAGTTGTAGCAGAATGGTAAGTGCAGCTGCATCAGAATGTG
GCGACAGGCCCATAACCTTCTCGGGCTGAGGACATGGAGGGTAATAATTC
ATCCTCATTGCTTGCACTCCATTTTCAAAGAATTCTCTCATTTCTTCATC
TTTGATATTTAACACTTCTC
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