CN187729

Overview
NameCN187729
Unique NameCN187729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2617 contig Csv1_Contig2617:619..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 46/139 (33.09%), Postives = 75/139 (53.96%), Query Frame = -3
Query:  304 RMNYYPPCPQ----PEKVMGLSPHSDAAALTILLQLNEVEGLQVK-KDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYAREL 705
            R+N+YP CP+     E ++G   H+D   ++IL + N   G Q+  +DG WI V P   +F +N+GD+L+++TNG ++S+ HR + N +  RLS+          ++ P  SL+  K   L++     EY  S Y   L
Sbjct:  177 RVNHYPACPELAINGENLIGFGEHTDPQIISIL-RSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLMKGK-ESLYKEFTWFEYKSSTYGSRL 313          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = -3
Query:  433 LNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVA 762
            +N+  E     FE     +R+N Y P     +V GL PH+D + LTIL Q +++ GL+++ +G+WI V P  +A  VNIGD  + ++NG Y+S+ HR +  +  ER+S+A
Sbjct:  178 VNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQ-DQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIA 286          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 42/146 (28.77%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  304 ENGVQAMRMNYYPPCPQPE----KVMGLSPHSDAAALTILLQLNEVEGLQV-KKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYAREL 726
            E      R+N+YPPCP+ +     ++G   H+D   +++L + N   GLQ+   DG W+ V P   +F +N+GD L+++TNG ++S++HR + ++ + RLS+           + P  S++ +    L++     EY ++ Y   L
Sbjct:  174 EKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVL-RSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGPALSENIAPLPSVMLKGEECLYKEFTWCEYKKAAYTSRL 318          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 41/145 (28.28%), Postives = 77/145 (53.10%), Query Frame = -3
Query:  304 ENGVQAMRMNYYPPCPQPEKVM---GLSPHSDAAALTILLQLNEVEGLQV-KKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRYAREL 726
            E     +R+N+YP   +  + M   G   H+D   +++L + N   GLQ+  KDG W+ V P   +F +N+GD L+++TNG ++S++HR + ++ + R+S+          ++ P   L+ E+   L++     +Y  S Y  +L
Sbjct:  178 EKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVL-RSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQYKSSAYKSKL 321          
BLAST of CN187729 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 45/153 (29.41%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  316 EVLNIKDEEMREFFENGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKK--DGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRMRIEEYFRSRY 768
            E L +  +   EF  +   ++R+  YP  P     +G+  H+DA ALT++ Q N V+GL++       ++ V+P P A I N+GD + I+TN  Y+S  HR   NS  +R ++        D  V P   L      P+     + ++F++ Y
Sbjct:  239 ESLELSPDAFDEFCSDPTTSIRLLRYPSSPNR---LGVQEHTDADALTLMSQDN-VKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGLGPSTAEPIAVEDLLRDHFQNSY 387          
The following BLAST results are available for this feature:
BLAST of CN187729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX1_PEA2.704e-1633.09Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX7_ARATH3.532e-1638.18Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX_PHACN6.024e-1628.77Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX2_ARATH1.938e-1428.28Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ISP7_SCHPO1.536e-1129.41Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187729 ID=CN187729; Name=CN187729; organism=Citrus sinensis; type=EST; length=770bp
CTTTTTTGAATAGCACCACTATATATCATGGGAAGATTCCAGGCATAAGT
CTGCAATTCTTAAGATTCTTACATGGTCTATTCAGTATCTCAAATGATAG
AGCTATTAGAAACACAACGACCCTAGCATAGCAGGTTATACCACAGTATT
CATAGAACTTATTTCTTATTTTCAGTTCCACACACAATCTTAATGGCAAG
GCCCTTCAGAGTTTTTGTACCAAACTCTTTAGTTATCCGAAATAAACTTA
TACTAGCCTTGACCATGTTGAATTCTCAGGGAATCCAGCTGAGATTTTCC
CCTAAGCTCACGAGCATACCGGCTCCTAAAGTATTCTTCAATTCTCATTC
TTCTAAACAAAGGAGGAGTTTTTTCAGAGATCAAACTGGAGGCAGGATAC
ACTTCACCATCATATCTCACTGAGTAAACTGTGGCAACGGAAAGTCTTTC
CTGTACAGAGTTTACAACTGCACGATGCTCAATGCTACGGTATGTCCCAT
TGGTTATAATCTCCAATGTGTCTCCAATGTTGACAATGAAAGCATCCGGG
AGTGGGGTAACAGGAATCCACTTTCCATCCTTCTTTACCTGGAGACCCTC
CACTTCATTAAGTTGTAGCAGAATGGTAAGTGCAGCTGCATCAGAATGTG
GCGACAGGCCCATAACCTTCTCGGGCTGAGGACATGGAGGGTAATAATTC
ATCCTCATTGCTTGCACTCCATTTTCAAAGAATTCTCTCATTTCTTCATC
TTTGATATTTAACACTTCTC
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