CX675500

Overview
NameCX675500
Unique NameCX675500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SKY1_YEAST (Serine/threonine-protein kinase SKY1 OS=Saccharomyces cerevisiae GN=SKY1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.635e-29
Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEKC-----VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            YR GGYH    G+ +   RYI  RKLGWG FS VWLA D   +++VA+KI +    + +AA  EI++L  V D D + E       +++L+DHF H GPNG H+ MV E LG++LL LIK    +G+ L  V++I K +L GLDY+
Sbjct:  139 YRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYM 284          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SKY1_DICDI (Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.221e-27
Identity = 71/174 (40.80%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYD----------------TRTSS-----------------YVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y++GGYH VR  D++ G RY    KLGWG FS VWL  D                T TSS                  VALKI +SA  +++ A  EI++L+A++  + + +KCV RL+DHF H GPNG+H CMV E LG++LL LIK+ R +G+ +  V+ + K  L  LDY+
Sbjct:  117 YKQGGYHPVRRNDVY-GNRYQVVDKLGWGHFSTVWLCNDKDTPITTSSSSSSTTTTTTSSSSNGNGNGNGGNVIGYKQVALKIVRSARTYSETAEDEIKILNAISKYN-AQDKCVARLLDHFTHRGPNGRHYCMVFELLGNNLLDLIKHHRYRGMPITLVKTLMKQTLIALDYI 288          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: DYRK1_DICDI (Probable serine/threonine-protein kinase dyrk1 OS=Dictyostelium discoideum GN=dyrk1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  240 HAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            + VR+G++F   R+     LG G F  V  A+D+    YVA+KI K+   F   AL EI +L  + + DP  +  +I+L  HFK       HLC+V E L  +L  L++ +   G+ LN +++    ILT L ++
Sbjct:  292 YIVRIGEVFVD-RFEIISSLGKGSFGQVVKAFDSVLKEYVAIKIIKNKVPFYNQALIEIRLLELMNNKDPEDQYKIIKLKHHFKFR----NHLCIVTELLSYNLYDLLRNTHFHGVSLNLIKKFAHQILTALFFM 421          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  237 YHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEKCV---IRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGL 635
            Y+ V+VG+  N  RY     +G G FS V   +DT +S  VA+KI +SA ++ + AL EI++L  +     S  K +   IRL+D F        H+C+V +  G SL   +K +R + L L++++ I K +LT +
Sbjct:  577 YYKVQVGEYLNN-RYKVLCTVGSGTFSTVVECWDTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFK----DHICLVFKRYGLSLYEFLKKNRYRPLPLSQIQNISKQLLTAI 707          
The following BLAST results are available for this feature:
BLAST of CX675500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SKY1_YEAST2.635e-2945.21Serine/threonine-protein kinase SKY1 OS=Saccharomy... [more]
SKY1_DICDI3.221e-2740.80Probable serine/threonine-protein kinase sky1 OS=D... [more]
DYRK1_DICDI1.716e-1234.07Probable serine/threonine-protein kinase dyrk1 OS=... [more]
CLKA_DICDI3.236e-1134.56Probable serine/threonine-protein kinase clkA OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F07-L14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675500 ID=CX675500; Name=CX675500; organism=Citrus sinensis; type=EST; length=644bp
TCTTGTGTTCGTATTGAATTTAATTCAACCCACAGGGCTCGCAAAAAAGC
AGGAAAATAAAAAAAAAAAGTATCAAATTTATCAGAATAACATTTTGGAA
ACCAAACTTTCCAAATACGCTCCATCAATCAATTGCAGCTGCAATCAAAT
CAGGCGGTGGTTATACGATGTCGTGTTCGTCGTCGTCGGGCTCTGAGGAT
GACGATGAGGGAATCGACTCCTACCGTAAAGGCGGTTATCATGCCGTTAG
AGTCGGCGATCTGTTTAACGGTGGCCGGTACATAGCTCAGAGGAAGCTTG
GGTGGGGCCAGTTTTCCATCGTCTGGCTTGCTTACGACACTCGAACTTCT
AGTTATGTTGCTCTTAAGATTCAGAAAAGTGCAGCACAGTTTGCTCAAGC
GGCTCTTCATGAGATTGAAGTCCTTTCCGCTGTTGCTGATGGTGACCCCT
CANATGAGAAGTGTGTTATAAGACTGATTGACCACTTTAAGCATGCAGGT
CCNAATGGGCAGCATCTTTGCATGGTCCTTGAATTTCTTGGTGATAGCTT
ACTCCGGCTGATCAAATATAGTCGCTAACAAGGACTTGAGTTGAATAAAG
TTAGGGAAATCTGCAAATACATTTTGACAGGTCTGGATTACTTA
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