CK938451 | Citrus Genome Database

Overview


Name	CK938451
Unique Name	CK938451
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	549

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9035	contig	Csv1_Contig9035:192..740.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_SACHY (Photosystem I P700 chlorophyll a apoprotein A2 OS=Saccharum hybrid GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_POPTR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Populus trichocarpa GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_POPAL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Populus alba GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PLAOC (Photosystem I P700 chlorophyll a apoprotein A2 OS=Platanus occidentalis GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PIPCE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Piper cenocladum GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PHAVU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Phaseolus vulgaris GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PELHO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PANGI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Panax ginseng GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ORYSJ (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oryza sativa subsp. japonica GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ORYSI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oryza sativa subsp. indica GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

The following BLAST results are available for this feature:

BLAST of CK938451 vs. ExPASy Swiss-Prot

BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292


Match Name	E-value	Identity	Description
PSAB_SACHY	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_POPTR	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_POPAL	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_PLAOC	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_PIPCE	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_PHAVU	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_PELHO	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_PANGI	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_ORYSJ	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_ORYSI	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA