CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_EMIHU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Emiliania huxleyi GN=psaB PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.513e-52
Identity = 91/107 (85.05%), Postives = 102/107 (95.33%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 328
            NSS LINGYN FGMN+ +VWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTP+ANL++WRDKPVALSIVQARLVGLAHF+VG+IFT+A F+IAST+GKF
Sbjct:  627 NSSPLINGYNAFGMNAQAVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPIANLVKWRDKPVALSIVQARLVGLAHFTVGFIFTFAPFVIASTTGKF 733          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_SELUN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Selaginella uncinata GN=psaB PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.825e-52
Identity = 98/108 (90.74%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG NSLSVWAWMF FGHLVWATGFMFLI  RGYWQELIETLA AHERTPLANL+RW DKPVALSIVQARLVGLAHFSVGYIFTYAAF I ST+GKFG
Sbjct:  627 NSSQLINGYNPFGTNSLSVWAWMFSFGHLVWATGFMFLIPRRGYWQELIETLARAHERTPLANLVRWGDKPVALSIVQARLVGLAHFSVGYIFTYAAFPIPSTAGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PROMT (Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus marinus (strain NATL2A) GN=psaB PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.022e-51
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG+N+LS WAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAH+RTP+ANL+ WRDKPVALSIVQARLVGL HF+VG   T+ AF+IASTSGKFG
Sbjct:  635 NSSQLINGYNPFGVNALSPWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHQRTPIANLVGWRDKPVALSIVQARLVGLTHFTVGNFVTFGAFVIASTSGKFG 742          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PROMA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus marinus GN=psaB PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.022e-51
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG+N+LS WAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAH+RTP+ANL+ WRDKPVALSIVQARLVGL HF+VG   T+ AF+IASTSGKFG
Sbjct:  640 NSSQLINGYNPFGVNALSPWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHQRTPIANLVGWRDKPVALSIVQARLVGLTHFTVGNFVTFGAFVIASTSGKFG 747          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PROM1 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus marinus (strain NATL1A) GN=psaB PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.022e-51
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG+N+LS WAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAH+RTP+ANL+ WRDKPVALSIVQARLVGL HF+VG   T+ AF+IASTSGKFG
Sbjct:  635 NSSQLINGYNPFGVNALSPWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHQRTPIANLVGWRDKPVALSIVQARLVGLTHFTVGNFVTFGAFVIASTSGKFG 742          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_OLTVI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oltmannsiellopsis viridis GN=psaB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.517e-50
Identity = 90/108 (83.33%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNP GMNSL VW+W FL  HL++ATGFMFLISWRGYWQELIETL W+HERTPLA+L+RWRDKPVALSIVQARLVGL HFSVGY+ TY +FLIASTS KFG
Sbjct:  627 NSSQLINGYNPNGMNSLGVWSWAFLLAHLIYATGFMFLISWRGYWQELIETLVWSHERTPLASLVRWRDKPVALSIVQARLVGLVHFSVGYVLTYGSFLIASTSSKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PROMM (Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus marinus (strain MIT 9313) GN=psaB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.748e-49
Identity = 87/108 (80.56%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQ+INGYNPFG+N+LS WA+MFL GHLVWATGFMFLISWRGYWQELIETL WAH+R+P+ANL+ WRDKPVALSIVQARLVG+ HF+VG IFT+ AF+IAST+ KFG
Sbjct:  642 NSSQIINGYNPFGINNLSPWAYMFLAGHLVWATGFMFLISWRGYWQELIETLVWAHQRSPIANLVGWRDKPVALSIVQARLVGVTHFAVGNIFTFGAFVIASTASKFG 749          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PROM3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus marinus (strain MIT 9303) GN=psaB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.748e-49
Identity = 87/108 (80.56%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQ+INGYNPFG+N+LS WA+MFL GHLVWATGFMFLISWRGYWQELIETL WAH+R+P+ANL+ WRDKPVALSIVQARLVG+ HF+VG IFT+ AF+IAST+ KFG
Sbjct:  642 NSSQIINGYNPFGINNLSPWAYMFLAGHLVWATGFMFLISWRGYWQELIETLVWAHQRSPIANLVGWRDKPVALSIVQARLVGVTHFAVGNIFTFGAFVIASTASKFG 749          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_GLOVI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gloeobacter violaceus GN=psaB PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.249e-48
Identity = 87/108 (80.56%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    8 NSSQLINGYNPFG-MNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 328
            NS+ LI GY+P G  N+LSVWAWMFLFGHLVWATGFMFLI+WRGYWQELIETL WAHERTPLANL+RW+DKPVA+SIVQ RLVGLAHF++GYI TYAAFLIAST+  +
Sbjct:  609 NSAPLIGGYSPSGGTNALSVWAWMFLFGHLVWATGFMFLIAWRGYWQELIETLVWAHERTPLANLVRWKDKPVAMSIVQGRLVGLAHFTIGYILTYAAFLIASTAALY 716          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_BIGNA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Bigelowiella natans GN=psaB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.580e-47
Identity = 86/107 (80.37%), Postives = 96/107 (89.72%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 328
            NSSQLINGYNP GMN+LSVW+WMFLFGHL++ATGFMFLISWRGYWQELIETL WAH+R P   ++ W +KPVAL+IVQAR VGL HF+VGYI TYAAFLIASTSGKF
Sbjct:  631 NSSQLINGYNPLGMNALSVWSWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHDRLP---IVLWPEKPVALTIVQARFVGLIHFTVGYILTYAAFLIASTSGKF 734          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_EMIHU3.513e-5285.05Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_SELUN7.825e-5290.74Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PROMT1.022e-5184.26Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PROMA1.022e-5184.26Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PROM11.022e-5184.26Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_OLTVI2.517e-5083.33Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PROMM4.748e-4980.56Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PROM34.748e-4980.56Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_GLOVI5.249e-4880.56Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_BIGNA7.580e-4780.37Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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