CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_HETTR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Heterocapsa triquetra GN=psaB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.770e-33
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 2
Query:    5 FNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRD---KPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTS 319
            FNS  LI GY+  G N LSVWAW+FL  HL WATGFMFLISWRGYWQELI+ + + H +TP+   I W      PVALSIVQAR +GL HF+VG+I TYAAF++ ST+
Sbjct:  670 FNSGSLIRGYDALGANDLSVWAWIFLAAHLCWATGFMFLISWRGYWQELIDIILYMHLKTPILYDI-WNAGVYTPVALSIVQARFIGLVHFAVGFIITYAAFIVGSTT 776          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_AMPCA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphidinium carterae GN=psaB PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.308e-29
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRD--KPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTS 319
            N + L++GY+  G N L+VWAW FL  HL WATGFMFLISWRGYWQELI+T+ + H +     +    D   PVALSIVQAR +GLAH+  G+I TY AF++ +TS
Sbjct:  539 NCAALLSGYDSLGSNDLAVWAWAFLLAHLAWATGFMFLISWRGYWQELIDTVIYMHLKAQARFIGLAADVVTPVALSIVQARFIGLAHYVAGFILTYHAFVVGATS 644          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SYNP2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            SSQ+IN Y     ++LS +  MFL GH V+A   MFL S RGYWQELIE++ WAH +  LA  I    +P ALSIVQ R VG+AH+ +G I T  AF +A
Sbjct:  642 SSQVINSYG----SALSAYGIMFLAGHFVFAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPAI----QPRALSIVQGRAVGVAHYLLGGIVTTWAFFLA 733          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PINTH (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pinus thunbergii GN=psaA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH+ +G I T  AF +A
Sbjct:  656 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAHYLLGGIVTTWAFFLA 747          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PINKO (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pinus koraiensis GN=psaA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAHYLLGGIVTTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SYNJB (Photosystem I P700 chlorophyll a apoprotein A1 OS=Synechococcus sp. GN=psaA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            S Q+IN Y     ++LS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSI+Q R VG+AH+ +G I T  AF +A
Sbjct:  658 SVQVINSYG----SALSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIIQGRAVGVAHYLLGGIVTTWAFFLA 749          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PHYPA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Physcomitrella patens GN=psaA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAHYLLGGIATTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ANGEV (Photosystem I P700 chlorophyll a apoprotein A1 OS=Angiopteris evecta GN=psaA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAHYLLGGIATTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SYNJA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=psaA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            S Q+IN Y     + LS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSI+Q R VG+AH+ +G I T  AF +A
Sbjct:  658 SVQVINSYG----SELSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIIQGRAVGVAHYLLGGIVTTWAFFLA 749          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PSINU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Psilotum nudum GN=psaA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIIWAHNKLKVAPAI----QPRALSIVQGRAVGVAHYLLGGIATTWAFFLA 744          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_HETTR4.770e-3362.04Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_AMPCA9.308e-2955.66Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAA_SYNP21.141e-1852.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PINTH9.655e-1849.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PINKO9.655e-1849.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SYNJB1.261e-1748.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PHYPA1.261e-1749.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ANGEV1.261e-1749.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SYNJA1.647e-1748.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PSINU1.647e-1749.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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