CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_VITVI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SYNS3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Synechococcus sp. (strain CC9311) GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            ++Q+IN Y     ++ S +  MFL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSI Q R VG+AH+ +G I T  AF  A
Sbjct:  670 AAQVINSYG----SNTSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSITQGRAVGVAHYLLGGIATTWAFFHA 761
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SYNPW (Photosystem I P700 chlorophyll a apoprotein A1 OS=Synechococcus sp. (strain WH7803) GN=psaA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            ++Q+IN Y     ++ S +  MFL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSI Q R VG+AH+ +G I T  AF  A
Sbjct:  670 AAQVINSYG----SNTSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSITQGRAVGVAHYLLGGIATTWAFFHA 761
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SOYBN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Glycine max GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROMS (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain AS9601) GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            +SQ++  Y      S+S++  MFL  H +WA   MFL S RGYWQEL E++ WAH +  +A  I    +P ALSI Q R VG+ HF VG I T  AF  A   G
Sbjct:  670 ASQVLTSYG----QSISMYGLMFLGAHFIWAFSLMFLFSGRGYWQELFESIVWAHNKLKVAPTI----QPRALSITQGRAVGVTHFLVGGIATTWAFFHARLFG 765
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROM4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain MIT 9211) GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            SSQ++  Y       +S++  MFL  H VWA   MFL S RGYWQEL E++ WAH +  +A  I    +P ALSI Q R VG+AHF +G I T  AF  A   G
Sbjct:  676 SSQVLTSYG----QPISMYGLMFLGAHFVWAFSLMFLFSGRGYWQELFESIVWAHNKLKVAPTI----QPRALSITQGRAVGVAHFLLGGIATTWAFFHARLIG 771
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROM0 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain MIT 9301) GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            +SQ++  Y      S+S++  MFL  H +WA   MFL S RGYWQEL E++ WAH +  +A  I    +P ALSI Q R VG+ HF VG I T  AF  A   G
Sbjct:  670 ASQVLTSYG----QSISMYGLMFLGAHFIWAFSLMFLFSGRGYWQELFESIVWAHNKLKVAPTI----QPRALSITQGRAVGVTHFLVGGIATTWAFFHARLFG 765
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PIPCE (Photosystem I P700 chlorophyll a apoprotein A1 OS=Piper cenocladum GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PHAVU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_VITVI2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SYNS32.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SYNPW2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SPIOL2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SOYBN2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROMS2.378e-1645.19Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROM42.378e-1646.15Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROM02.378e-1645.19Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PIPCE2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PHAVU2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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