CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_LOBMA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lobularia maritima GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_LIRTU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Liriodendron tulipifera GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_LEPVR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lepidium virginicum GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_LACSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lactuca sativa GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_JASNU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Jasminum nudiflorum GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_HELAN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Helianthus annuus GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_EUCGG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Eucalyptus globulus subsp. globulus GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_DRIGR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Drimys granadensis GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_DRANE (Photosystem I P700 chlorophyll a apoprotein A1 OS=Draba nemorosa GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_DAUCA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_LOBMA2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_LIRTU2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_LEPVR2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_LACSA2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_JASNU2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_HELAN2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_EUCGG2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_DRIGR2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_DRANE2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_DAUCA2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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