CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CUCSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CRUWA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Crucihimalaya wallichii GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_COFAR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CITSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CAPBU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Capsella bursa-pastoris GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CALFG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_BARVE (Photosystem I P700 chlorophyll a apoprotein A1 OS=Barbarea verna GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ARAHI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_AMBTC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda GN=psaA PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_AETGR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflora GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_CUCSA2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_CRUWA2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_COFAR2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_CITSI2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_CAPBU2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_CALFG2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_BARVE2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ARAHI2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_AMBTC2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_AETGR2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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