CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_AETCO (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ACOCL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ACAM1 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acaryochloris marina (strain MBIC 11017) GN=psaA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            S Q+IN Y     ++LS +  +FL  H +WA   MFL S RGYWQELIE++ WAH +  +A  I    +P A+SI Q R VGL H+ +G I T  +F +A
Sbjct:  656 SVQVINSYG----SALSAYGILFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHSKLKIAPAI----QPRAMSITQGRAVGLGHYLLGGIVTSWSFYLA 747
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_WHEAT (Photosystem I P700 chlorophyll a apoprotein A1 OS=Triticum aestivum GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_TOBAC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana tabacum GN=psaA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SORBI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Sorghum bicolor GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SOLTU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum tuberosum GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SOLLC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum lycopersicum GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SOLBU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum bulbocastanum GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SACOF (Photosystem I P700 chlorophyll a apoprotein A1 OS=Saccharum officinarum GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_AETCO2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ACOCL2.378e-1647.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ACAM12.378e-1645.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_WHEAT3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_TOBAC3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SORBI3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SOLTU3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SOLLC3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SOLBU3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_SACOF3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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