CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SACHY (Photosystem I P700 chlorophyll a apoprotein A1 OS=Saccharum hybrid GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROMT (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain NATL2A) GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 49/104 (47.12%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            SSQ++  Y       +S++  MFL  H VWA   MFL S RGYWQEL E++ WAH +  LA  I    +P ALSI Q R VG AHF +G I T  AF  A   G
Sbjct:  671 SSQVLTSYG----QPISMYGLMFLGAHFVWAFSLMFLFSGRGYWQELFESIIWAHNKLNLAPTI----QPRALSITQGRAVGAAHFLLGGIATTWAFFHARLIG 766          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROMM (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain MIT 9313) GN=psaA PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 49/104 (47.12%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            SSQ++  Y       LS +  +FL GH VWA   MFL S RGYWQEL E++ WAH +  LA  I    +P ALSI Q R VG+ HF  G I T  AF  A   G
Sbjct:  679 SSQVLTSYG----TGLSGYGLLFLGGHFVWAFSLMFLFSGRGYWQELFESIIWAHNKLKLAPTI----QPRALSITQGRAVGVTHFLFGGIVTTWAFFHARLLG 774          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROMA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus GN=psaA PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            SSQ++  Y       +S++  MFL  H VWA   MFL S RGYWQEL E++ WAH +  +A  I    +P ALSI Q R VG+AHF +G I T  AF  A   G
Sbjct:  676 SSQVLTSYG----QPISMYGLMFLGAHFVWAFSLMFLFSGRGYWQELFESIIWAHNKLKVAPTI----QPRALSITQGRAVGVAHFLLGGIATTWAFFHARLIG 771          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROM3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain MIT 9303) GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 49/104 (47.12%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            SSQ++  Y       LS +  +FL GH VWA   MFL S RGYWQEL E++ WAH +  LA  I    +P ALSI Q R VG+ HF  G I T  AF  A   G
Sbjct:  679 SSQVLTSYG----TGLSGYGLLFLGGHFVWAFSLMFLFSGRGYWQELFESIIWAHNKLKLAPTI----QPRALSITQGRAVGVTHFLFGGIVTTWAFFHARLLG 774          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROM1 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain NATL1A) GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 49/104 (47.12%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            SSQ++  Y       +S++  MFL  H VWA   MFL S RGYWQEL E++ WAH +  LA  I    +P ALSI Q R VG AHF +G I T  AF  A   G
Sbjct:  671 SSQVLTSYG----QPISMYGLMFLGAHFVWAFSLMFLFSGRGYWQELFESIIWAHNKLNLAPTI----QPRALSITQGRAVGAAHFLLGGIATTWAFFHARLIG 766          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_POPTR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus trichocarpa GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_POPAL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Populus alba GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ORYSJ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa subsp. japonica GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ORYSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa subsp. indica GN=psaA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSI+Q R VG+ H+ +G I T  AF +A
Sbjct:  653 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_SACHY3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROMT3.106e-1647.12Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROMM3.106e-1647.12Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROMA3.106e-1646.15Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROM33.106e-1647.12Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PROM13.106e-1647.12Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_POPTR3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_POPAL3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ORYSJ3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ORYSI3.106e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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