CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PROM5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Prochlorococcus marinus (strain MIT 9515) GN=psaA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSG 322
            ++Q++  Y      S+S++  MFL  H +WA   MFL S RGYWQEL E++ WAH +  +A  I    +P ALSI Q R VG+ HF VG I T  AF  A   G
Sbjct:  663 AAQVLTSYG----QSISMYGLMFLGAHFIWAFSLMFLFSGRGYWQELFESIVWAHNKLKVAPTI----QPRALSITQGRAVGVTHFLVGGIATTWAFFHARLFG 758          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_PHATR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaeodactylum tricornutum GN=psaA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     ++ S +  +FL  H +WA   MFL S RGYWQELIE++ WAH +   A  I    +P ALSI Q R VGLAH+ +G I T  AF +A
Sbjct:  655 ASQVIQSYG----SAASAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLNFAPAI----QPRALSITQGRAVGLAHYLLGGIGTTWAFFLA 746          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_THAPS (Photosystem I P700 chlorophyll a apoprotein A1 OS=Thalassiosira pseudonana GN=psaA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     ++ S +  +FL  H +WA   MFL S RGYWQELIE++ WAH +   A  I    +P ALSI Q R VGLAH+ +G I T  AF +A
Sbjct:  655 ASQVIQSYG----SASSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLNFAPTI----QPRALSITQGRAVGLAHYLLGGIGTTWAFFLA 746          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CYAPA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cyanophora paradoxa GN=psaA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     ++LS +  MFL  H +WA   MFL S RGYWQELIE++ WAH +   A  I    +P ALSI Q R VG+AH+ +G I T  +F  A
Sbjct:  655 ASQVIQSYG----SALSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKFAPSI----QPRALSITQGRAVGVAHYLLGGIATTWSFFHA 746          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ODOSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Odontella sinensis GN=psaA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +SQ+I  Y     ++ S +  +FL  H +WA   MFL S RGYWQELIE++ WAH +   A  I    +P ALSI Q R VGLAH+ +G I T  +F +A
Sbjct:  655 ASQVIQSYG----SASSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLNFAPAI----QPRALSITQGRAVGLAHYLLGGIGTTWSFFLA 746          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ENCLE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Encephalartos lebomboensis GN=psaA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF 268
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A +I    +P ALSIVQ R VG+AH+
Sbjct:  642 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLEVAPVI----QPRALSIVQGRAVGVAHY 719          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SYNSC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Synechococcus sp. (strain CC9605) GN=psaA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.434e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:   14 SQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            +Q +   N +G N+ + +  MFL  H V+A   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSI+Q R VG+AH+ +G I T  AF  A
Sbjct:  668 AQAVQVINSYGSNT-AAYGIMFLGAHFVFAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIIQGRAVGVAHYLLGGIATTWAFFHA 761          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_GINBI (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Ginkgo biloba GN=psaA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF 268
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH+
Sbjct:  644 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAHY 721          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_SEQSE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Sequoia sempervirens GN=psaA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAH 265
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH
Sbjct:  644 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAH 720          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ARAAA (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Araucaria araucana GN=psaA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAH 265
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH
Sbjct:  640 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAH 716          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_PROM55.298e-1644.23Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_PHATR5.298e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_THAPS6.919e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_CYAPA6.919e-1646.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ODOSI1.541e-1545.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_ENCLE1.541e-1550.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_SYNSC3.434e-1545.45Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_GINBI4.485e-1550.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_SEQSE5.858e-1550.59Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_ARAAA5.858e-1550.59Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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