CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_MARBO (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Marsilea botrycarpa GN=psaA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF 268
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A +     +P ALSI+Q R VG+AH+
Sbjct:  643 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPV----TQPRALSIIQGRAVGVAHY 720          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_EQUPA (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Equisetum palustre GN=psaA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAH 265
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH
Sbjct:  643 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAI----QPRALSIVQGRAVGVAH 719          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_EPHTW (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Ephedra tweediana GN=psaA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAH 265
            +SQ+I  Y     ++LS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+AH
Sbjct:  644 ASQVIQSYG----SALSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVAH 720          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_CYCRE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Cycas revoluta GN=psaA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLA 262
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A +I    +P ALSIVQ R VG+A
Sbjct:  642 ASQVIQSYG----SSLSAYGLLFLGAHXVWAFSLMFLFSGRGYWQELIESIVWAHNKLEVAPVI----QPRALSIVQGRAVGVA 717          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_ASPND (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Asplenium nidus GN=psaA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAH 265
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A +     +P ALSI+Q R VG+ H
Sbjct:  642 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPV----TQPRALSIIQGRAVGVTH 718          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_HETTR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Heterocapsa triquetra GN=psaA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            ++++I  Y     + LS +  +FL  H  WA   MFL S RGYWQELIE++ WAH +  +   I    +P ALSI Q R VGL H+ +G I T  AF +A
Sbjct:  633 AAEVIQSYG----SGLSGYGLIFLGAHFTWAFSLMFLWSGRGYWQELIESILWAHHKLKIVPNI----QPRALSITQGRAVGLVHYMLGGIGTTWAFFLA 724          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_TORCL (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Torreya californica GN=psaA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLA 262
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R VG+A
Sbjct:  644 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGRAVGVA 719          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_STIHE (Photosystem I P700 chlorophyll a apoprotein A1 OS=Stigeoclonium helveticum GN=psaA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            SSQ+I  Y     ++LS +  +FL  H +  TG + + S RGYWQELIE++ W+H +  +A  I    +P ALSI Q R VG+AH+ +G I T  +F +A
Sbjct:  654 SSQVIQSYG----SALSAYGLIFLGAHFILLTGMLDIFSGRGYWQELIESILWSHAKLKVAPTI----QPRALSITQGRAVGVAHYLLGGIATTWSFFLA 745          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_DRIWI (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Drimys winteri GN=psaA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAH 265
            +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H
Sbjct:  641 ASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTH 717          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_AMPOP (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Amphidinium operculatum GN=psaA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            ++Q+I  Y     + L+ +   FL  H VWA   MFL S RGYWQELIE++ WAH +  +   I    +P ALSI   R VGL H+ +G I T  +F +A
Sbjct:  573 AAQVIQSYG----SPLAAYGLTFLASHFVWALSLMFLFSGRGYWQELIESVLWAHHKLYVVPHI----QPRALSITSGRAVGLTHYLLGGIGTTWSFFLA 664          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_MARBO7.650e-1547.67Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_EQUPA7.650e-1550.59Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_EPHTW2.226e-1449.41Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_CYCRE3.797e-1450.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_ASPND4.959e-1447.06Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_HETTR6.476e-1443.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_TORCL8.458e-1450.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_STIHE8.458e-1442.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]
PSAA_DRIWI1.105e-1348.24Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_AMPOP1.884e-1342.00Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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