CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9035 contig Csv1_Contig9035:192..740. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_HUPSQ (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Huperzia squarrosa GN=psaA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQAR 247
            +SQ+I  Y     +SLS +  +FL  H VWA   MFL S RGYWQELIE++ WAH +  +A  I    +P ALSIVQ R
Sbjct:  643 ASQVIQSYG----SSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAI----QPRALSIVQGR 713
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAA_AMPCA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amphidinium carterae GN=psaA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 2 
Query:   11 SSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 310
            ++Q+I  Y     + L+ +   F   H VWA   MFL S RGYWQELIE++ WAH +  +   I    +P ALSI   R VG  H+ +G I +  +F +A
Sbjct:  580 AAQVIQSYG----SPLAAYGLTFPASHFVWALSLMFLFSGRGYWQELIESVLWAHHKLYVVPHI----QPRALSITSGRAVGFTHYLLGGIGSTWSFFLA 671
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAA_HUPSQ2.083e-1249.37Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
PSAA_AMPCA1.034e-1139.00Photosystem I P700 chlorophyll a apoprotein A1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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