CK938451 | Citrus Genome Database

Overview


Name	CK938451
Unique Name	CK938451
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	549

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_HELAN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Helianthus annuus GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_GOSHI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gossypium hirsutum GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_EUCGG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_DRIGR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Drimys granadensis GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_DIOEL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Dioscorea elephantipes GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_DAUCA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Daucus carota GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CUCSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CITSI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Citrus sinensis GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_BUXMI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Buxus microphylla GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ATRBE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Atropa belladonna GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2

Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

The following BLAST results are available for this feature:

BLAST of CK938451 vs. ExPASy Swiss-Prot

BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292


Match Name	E-value	Identity	Description
PSAB_HELAN	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_GOSHI	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_EUCGG	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_DRIGR	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_DIOEL	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_DAUCA	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_CUCSA	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_CITSI	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_BUXMI	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]
PSAB_ATRBE	1.020e-59	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA