CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9035 contig Csv1_Contig9035:192..740. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ANTMA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_AGRST (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera GN=psaB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.020e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PINTH (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pinus thunbergii GN=psaB PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.332e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PINKO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pinus koraiensis GN=psaB PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.332e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_MAIZE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Zea mays GN=psaB PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.332e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALS+VQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  628 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSVVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 735
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_OLIPU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Olimarabidopsis pumila GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_NASOF (Photosystem I P700 chlorophyll a apoprotein A2 OS=Nasturtium officinale GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_LOBMA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lobularia maritima GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_LEPVR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lepidium virginicum GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_DRANE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Draba nemorosa GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_ANTMA1.020e-59100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_AGRST1.020e-59100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PINTH1.332e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PINKO1.332e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_MAIZE1.332e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_OLIPU2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_NASOF2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_LOBMA2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_LEPVR2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_DRANE2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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