CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9035 contig Csv1_Contig9035:192..740. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CRUWA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Crucihimalaya wallichii GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CAPBU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Capsella bursa-pastoris GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_BARVE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Barbarea verna GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ARATH (Photosystem I P700 chlorophyll a apoprotein A2 OS=Arabidopsis thaliana GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ARAHI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Arabis hirsuta GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_AETGR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflora GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_AETCO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium GN=psaB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.272e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ZYGCR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Zygnema circumcarinatum GN=psaB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.967e-59
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_STAPU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Staurastrum punctulatum GN=psaB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.967e-59
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PHYPA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Physcomitrella patens GN=psaB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.967e-59
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_CRUWA2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CAPBU2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_BARVE2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ARATH2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ARAHI2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_AETGR2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_AETCO2.272e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ZYGCR2.967e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_STAPU2.967e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PHYPA2.967e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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