CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_NICTO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Nicotiana tomentosiformis GN=psaB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.967e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGL HFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLVHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_MARPO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Marchantia polymorpha GN=psaB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.967e-59
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_GOSBA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gossypium barbadense GN=psaB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.967e-59
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFT+AAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTFAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CHAGL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Chaetosphaeridium globosum GN=psaB PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.875e-59
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ADICA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Adiantum capillus-veneris GN=psaB PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 3.875e-59
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLAN+IRW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANMIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_LIRTU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Liriodendron tulipifera GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_JASNU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Jasminum nudiflorum GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLI WRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLIFWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ILLOL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Illicium oligandrum GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_COFAR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Coffea arabica GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWA GFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWAIGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CHLSC (Photosystem I P700 chlorophyll a apoprotein A2 OS=Chloranthus spicatus GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_NICTO2.967e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_MARPO2.967e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_GOSBA2.967e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CHAGL3.875e-5997.22Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ADICA3.875e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_LIRTU5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_JASNU5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ILLOL5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_COFAR5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CHLSC5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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