CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CALFG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Calycanthus floridus var. glaucus GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_AMBTC (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amborella trichopoda GN=psaB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.061e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG NSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGTNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PHAAO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Phalaenopsis aphrodite subsp. formosana GN=psaB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.609e-59
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGL HFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLVHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CYCTA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cycas taitungensis GN=psaB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.609e-59
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLAN +RWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANSVRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ACOCL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus GN=psaB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.609e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQ LIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQGLIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_NEPOL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Nephroselmis olivacea GN=psaB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 8.632e-59
Identity = 104/108 (96.30%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGY+FTYAAF+IASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYVFTYAAFVIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_MESVI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Mesostigma viride GN=psaB PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.127e-58
Identity = 103/108 (95.37%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQAR+VGLAHFSVGY+FTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARVVGLAHFSVGYVFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ANTFO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Anthoceros formosae GN=psaB PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.127e-58
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLTWAHERTPLANLVRWRDKPVALSIVQARLVGLTHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PSINU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Psilotum nudum GN=psaB PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.472e-58
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWA GFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWAIGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
[Close]
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ANGEV (Photosystem I P700 chlorophyll a apoprotein A2 OS=Angiopteris evecta GN=psaB PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.472e-58
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWA GFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWAIGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_CALFG5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_AMBTC5.061e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PHAAO6.609e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CYCTA6.609e-5998.15Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ACOCL6.609e-5999.07Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_NEPOL8.632e-5996.30Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_MESVI1.127e-5895.37Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ANTFO1.127e-5897.22Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PSINU1.472e-5897.22Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ANGEV1.472e-5897.22Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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