CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CHLAT (Photosystem I P700 chlorophyll a apoprotein A2 OS=Chlorokybus atmophyticus GN=psaB PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.923e-58
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGY+ TYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYVLTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CUSSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta sandwichiana GN=psaB PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.280e-58
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANLI WRDKPVALSIVQAR VGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLIHWRDKPVALSIVQARFVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_HUPLU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Huperzia lucidula GN=psaB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.595e-58
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            N SQLINGYNPFGMNSLSVWAWMFLFGHLVWA GFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NPSQLINGYNPFGMNSLSVWAWMFLFGHLVWAIGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_GNEPA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gnetum parvifolium GN=psaB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.595e-58
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMN+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HFSVGYIFTYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNTLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLVHFSVGYIFTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CHAVU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Chara vulgaris GN=psaB PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.628e-57
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNP GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGL+HFSVGYIFTYAAFLIASTS KFG
Sbjct:  627 NSSQLINGYNPLGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLSHFSVGYIFTYAAFLIASTSAKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CHLVU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Chlorella vulgaris GN=psaB PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.627e-57
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMNSLSVWAWMFLFGHL++ATGFMFLISWRGYWQELIETLAWAHERTPLANL+RWRDKPVALSIVQARLVGL HFSVGY+ TYAAFLIASTSGKFG
Sbjct:  627 NSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWRDKPVALSIVQARLVGLTHFSVGYVLTYAAFLIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_GUITH (Photosystem I P700 chlorophyll a apoprotein A2 OS=Guillardia theta GN=psaB PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.079e-57
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSS LINGYNPFGMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+VGYIFTYAAF+IAST+GKFG
Sbjct:  627 NSSPLINGYNPFGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYIFTYAAFVIASTAGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_GRATL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gracilaria tenuistipitata var. liui GN=psaB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.351e-56
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSS LINGYNP+GMN+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANL+RW+DKPVALSIVQARLVGL HFSVGYI TYAAF+IASTSGKFG
Sbjct:  627 NSSPLINGYNPYGMNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLVHFSVGYILTYAAFVIASTSGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_CYAPA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cyanophora paradoxa GN=psaB PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.010e-56
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFGMN+LSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGLAHF+VGYI TYAAFLIAST+ KFG
Sbjct:  630 NSSQLINGYNPFGMNNLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFAVGYIVTYAAFLIASTASKFG 737          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_THEVL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Thermosynechococcus vulcanus GN=psaB PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 5.237e-56
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG N+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYI TYAAFLIAST+ KFG
Sbjct:  634 NSSQLINGYNPFGTNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYILTYAAFLIASTAAKFG 741          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_CHLAT1.923e-5896.30Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CUSSA3.280e-5897.22Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_HUPLU5.595e-5896.30Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_GNEPA5.595e-5895.37Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CHAVU1.628e-5795.37Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CHLVU3.627e-5794.44Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_GUITH8.079e-5792.59Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_GRATL2.351e-5692.59Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_CYAPA4.010e-5691.67Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_THEVL5.237e-5692.59Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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