CK938451

Overview
NameCK938451
Unique NameCK938451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9035 contig Csv1_Contig9035:192..740. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_THEEB (Photosystem I P700 chlorophyll a apoprotein A2 OS=Thermosynechococcus elongatus (strain BP-1) GN=psaB PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 5.237e-56
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG N+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYI TYAAFLIAST+ KFG
Sbjct:  634 NSSQLINGYNPFGTNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYILTYAAFLIASTAAKFG 741          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_SYNEN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus elongatus naegeli GN=psaB PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 5.237e-56
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSSQLINGYNPFG N+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGLAHFSVGYI TYAAFLIAST+ KFG
Sbjct:  634 NSSQLINGYNPFGTNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYILTYAAFLIASTAAKFG 741          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PORYE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Porphyra yezoensis GN=psaB PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.840e-56
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSS LINGYNP+GMN+LSVW+WMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVALSIVQARLVGLAHFSVGY+ TYAAF++AST+GKFG
Sbjct:  627 NSSPLINGYNPYGMNNLSVWSWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSVGYVLTYAAFVLASTAGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_MASLA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Mastigocladus laminosus GN=psaB PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 8.933e-56
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NS+QLINGYNP+GMN+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+VGY+ TYAAFLIAST+GKFG
Sbjct:  636 NSAQLINGYNPYGMNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLTHFTVGYVLTYAAFLIASTAGKFG 743          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_SYNP2 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaB PE=3 SV=4)

HSP 1 Score: 215.698 bits (548), Expect = 1.167e-55
Identity = 96/108 (88.89%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NS+QLINGYNP+G+N+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIET+ WAHERTPLAN++RW+DKPVALSIVQARLVGLAHF+VGY+ TYAAFLIASTSGKFG
Sbjct:  626 NSAQLINGYNPYGVNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETIVWAHERTPLANIVRWKDKPVALSIVQARLVGLAHFTVGYVLTYAAFLIASTSGKFG 733          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_PORPU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Porphyra purpurea GN=psaB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.167e-55
Identity = 97/108 (89.81%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSS LINGYNP+GMN+LSVW+WMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRW+DKPVA+SIVQARLVGLAHFSVGY+ TYAAF++AST+GKFG
Sbjct:  627 NSSPLINGYNPYGMNNLSVWSWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVAMSIVQARLVGLAHFSVGYVLTYAAFVLASTAGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_THAPS (Photosystem I P700 chlorophyll a apoprotein A2 OS=Thalassiosira pseudonana GN=psaB PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.524e-55
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 328
            NSS LINGYNPFGMN+LSVW+WMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANLIRWRDKPVALSIVQARLVGL HFSVGYI TYAAF+IASTSGKF
Sbjct:  626 NSSPLINGYNPFGMNNLSVWSWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWRDKPVALSIVQARLVGLVHFSVGYILTYAAFVIASTSGKF 732          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_SYNY3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechocystis sp. (strain PCC 6803) GN=psaB PE=1 SV=4)

HSP 1 Score: 215.312 bits (547), Expect = 1.524e-55
Identity = 96/108 (88.89%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NS+QLINGYNP+G+N+LSVWAWMFLFGHLVWATGFMFLISWRGYWQELIET+ WAHERTPLANL+RW+DKPVALSIVQARLVGLAHF+VGY+ TYAAFLIAST+GKFG
Sbjct:  624 NSAQLINGYNPYGVNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETIVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTVGYVLTYAAFLIASTAGKFG 731          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_RHDSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Rhodomonas salina GN=psaB PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.524e-55
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 331
            NSS LINGYNPFGMNSLSVW+WMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+ GYIFTYAAF+IAST+GKFG
Sbjct:  627 NSSPLINGYNPFGMNSLSVWSWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLIHFTAGYIFTYAAFVIASTTGKFG 734          
BLAST of CK938451 vs. ExPASy Swiss-Prot
Match: PSAB_ODOSI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Odontella sinensis GN=psaB PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.524e-55
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 2
Query:    8 NSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 328
            NSS LINGYNPFGMN+LSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANLIRWRDKPVALSIVQARLVGL HF+VGYI TYAAF+IASTSGKF
Sbjct:  626 NSSPLINGYNPFGMNNLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWRDKPVALSIVQARLVGLVHFAVGYILTYAAFVIASTSGKF 732          
The following BLAST results are available for this feature:
BLAST of CK938451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
PSAB_THEEB5.237e-5692.59Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_SYNEN5.237e-5692.59Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PORYE6.840e-5690.74Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_MASLA8.933e-5689.81Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_SYNP21.167e-5588.89Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_PORPU1.167e-5589.81Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_THAPS1.524e-5592.52Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_SYNY31.524e-5588.89Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_RHDSA1.524e-5589.81Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]
PSAB_ODOSI1.524e-5592.52Photosystem I P700 chlorophyll a apoprotein A2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938451 ID=CK938451; Name=CK938451; organism=Citrus sinensis; type=EST; length=549bp
GGGGTTCAACTCTTCCCAACTTATCAATGGGTATAACCCGTTTGGTATGA
ATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGG
GCTACTGGATTTATGTTTTTAATTTCCTGGCGCGGGTATTGGCAAGAATT
GATTGAAACTTTAGCGTGGGCTCACGAACGCACACCCTTAGCTAATTTGA
TTCGATGGAGAGATAAACCAGTGGCCCTTTCCATTGTGCAAGCACGATTG
GTTGGATTAGCCCACTTCTCTGTAGGTTATATATTCACTTATGCGGCTTT
CTTGATTGCCTCTACATCGGGTAAATTTGGTTAATTCTTTCTGTCTTGTA
TCCGCGCGATAATATCATTTCTTTCGGTAGAGAAGGGGTATGCCTTCTTA
TATTTCTACAGCTATATTTCTACATCTAGGATCCGACTTGTATCATTGAT
AATAATAGGGACGGAACCGCTATGGCAAGGCAAAGTTTGATTCAGAGGGA
AAAGAAAAGGCACAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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