CX675497

Overview
NameCX675497
Unique NameCX675497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYAA_ARATH (Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  420 VYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENA 731
            +YVN+KQ  GI+RRRQSRAKAE   K+ + RKP +H SRH HAMRR RG GGRFLNTK      A++A++   S + SS+       +++SS    E  + ++A
Sbjct:  136 IYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNSQSSEVFHPENETINSSREANESNLSDSA 231          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: HAP2_YEAST (Transcriptional activator HAP2 OS=Saccharomyces cerevisiae GN=HAP2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  441 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQE 737
            +P YVNAKQ   IL+RR +RAK E + ++ + RKP LHESRH+HAMRR RG GGRFL   ++       A K   SGA      ++    + + I+Q++
Sbjct:  159 QPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEGGRFLTAAEI------KAMKSKKSGASDDPDDSHEDKKITTKIIQEQ 251          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: HAP2_SCHPO (Transcriptional activator hap2 OS=Schizosaccharomyces pombe GN=hap2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  453 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKA-RKPNLHESRHQHAMRRARGCGGRFLNTKKLND-NAANSAEKGMNSGADSSKGSTNGTGSVDSSI 737
            E +YVNAKQ   IL+RR++RAK E   + ++  +KP LHESRH+HAMRR RG GGRFL   K++   A  +AE   N G  S+    N T + D+++
Sbjct:    8 EGLYVNAKQYHRILKRREARAKLEERLRGVQTTKKPYLHESRHKHAMRRPRGPGGRFLTADKVSKLRAQEAAEAAANGG--STGDDVNATNANDATV 102          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA_RAT (Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus GN=Nfya PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  555 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKK 737
            EP+YVNAKQ   IL+RRQ+RAK E E K+ K R+  LHESRH+HAM R RG GGRF + K+
Sbjct:  257 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 317          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA_MOUSE (Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  555 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKK 737
            EP+YVNAKQ   IL+RRQ+RAK E E K+ K R+  LHESRH+HAM R RG GGRF + K+
Sbjct:  262 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 322          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA_HUMAN (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  555 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKK 737
            EP+YVNAKQ   IL+RRQ+RAK E E K+ K R+  LHESRH+HAM R RG GGRF + K+
Sbjct:  263 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 323          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA_BOVIN (Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  555 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKK 737
            EP+YVNAKQ   IL+RRQ+RAK E E K+ K R+  LHESRH+HAM R RG GGRF + K+
Sbjct:  257 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 317          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: HAP2_KLULA (Transcriptional activator HAP2 OS=Kluyveromyces lactis GN=HAP2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  552 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKL 737
            +P YVNAKQ   IL+RR +RAK E   K+ + R+P LHESRH+HAMRR RG GGRFL   ++
Sbjct:  185 QPFYVNAKQYYRILKRRYARAKLEENLKISRERRPYLHESRHKHAMRRPRGQGGRFLTAAEM 246          
The following BLAST results are available for this feature:
BLAST of CX675497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYAA_ARATH2.495e-1647.12Nuclear transcription factor Y subunit A-10 OS=Ara... [more]
HAP2_YEAST4.705e-1543.43Transcriptional activator HAP2 OS=Saccharomyces ce... [more]
HAP2_SCHPO5.202e-1446.39Transcriptional activator hap2 OS=Schizosaccharomy... [more]
NFYA_RAT6.794e-1462.30Nuclear transcription factor Y subunit alpha OS=Ra... [more]
NFYA_MOUSE6.794e-1462.30Nuclear transcription factor Y subunit alpha OS=Mu... [more]
NFYA_HUMAN6.794e-1462.30Nuclear transcription factor Y subunit alpha OS=Ho... [more]
NFYA_BOVIN6.794e-1462.30Nuclear transcription factor Y subunit alpha OS=Bo... [more]
HAP2_KLULA4.404e-1358.06Transcriptional activator HAP2 OS=Kluyveromyces la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F06-L12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675497 ID=CX675497; Name=CX675497; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTACAGGAAAGGTGAATGGACGAGGCGTGGGACTAAAGGCAGAGC
AATGAAGATAACATTATATCTTCATCCCTGTATTCTTCTTCCTCATCTCA
CCCAAAGCCACCACAAGTTTGCAAAGCCAAGAATGAATTGCCTGAGGACC
ACCACACCAATGATGATTTCCCCATTCTGAAAAGAAGGGCATGTATACCT
CCCGCTTCGCCCGTTAGAGCAATCATGGAGTGCCCCTCCAACGTCAAGGA
ACTTTCACTTTCACTTAACGGGAAGGGCCCCTCGTGGTGCCCCATTCCCC
TGCATGCTTCCCCTCTGCTGTCCCAGGAAGTTCCCTTCCACACTTCCACT
AGATGTATTGTACATTGATAGCAGACTCCGGCCATTACTGTTACTATTGG
AGGAAGTGTGTTCCCTGTGCGCGTTCTCCTCCATTGCCCTCTCTTGCTGA
ACTATGGATGAATCCACAGATCCAGTACCATTGGTGGACCCCTTTGAACT
GTCTGCACCAGAATTCATACCTTTTTCTGCAGAGTTTGCAGCATTGTCAT
TGAGCTTCTTAGTATTGAGAAAACGGCCTCCACAACCCCTAGCCCTTCTC
ATTGCATGTTGATGTCTGGACTCATGAAGATTAGGCTTTCTCGCTTTAAT
CACTTTCTTTTCAAGCTCAGCCTTAGCACGCGACTGTCTTCGTCTCAAAA
TACCTCTGTTCTGTTTTGCATTCACATAAACCGGCTCC
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