CK938438

Overview
NameCK938438
Unique NameCK938438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:21..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.403e-48
Identity = 97/165 (58.79%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ IAD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.403e-48
Identity = 97/166 (58.43%), Postives = 114/166 (68.67%), Query Frame = 2
Query:  167 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            +V+FD++  G+  GRIVM L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP FM Q            +SIYGEKF DENF LKHT PG+LSMANAG +TNGSQ FI T  TSWLDG+HVVFG V  G+D++ KVE+ G  +G    K+ IAD G+
Sbjct:    5 QVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.403e-48
Identity = 97/165 (58.79%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ IAD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.403e-48
Identity = 97/165 (58.79%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ IAD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.403e-48
Identity = 97/165 (58.79%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ IAD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.392e-48
Identity = 96/157 (61.15%), Postives = 110/157 (70.06%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK 640
            VY DV   G+P GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IPSFM Q            +SIYG +FPDENFKLKH GPG+LSMANAGP+TNGSQ FI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K
Sbjct:   49 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKK 198          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.081e-48
Identity = 100/166 (60.24%), Postives = 115/166 (69.28%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVIADSGE 664
            VYFD+E   KP GR+V+GL+GK VPKTAENFRAL TGEKG G       Y+GSTFHR+I  FM+Q            +SIYGEKF DENFK++HT  GLLSMANAG DTNGSQ FITTV T WLDGRHVVFG+VL G +VV  +E   +  G  P+  V I  SGE
Sbjct:   22 VYFDIEHGNKPLGRVVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGE 180          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 96/165 (58.18%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+   G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS+FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM +V  +E  G +NG    K+ I+D G+
Sbjct:    6 VFFDITADGEPLGRVCFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 96/165 (58.18%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFG V  GM++V  +E  G +NG    K+ IAD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFDLFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 96/165 (58.18%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+   G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS+FHRIIP FM Q             SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ I+D G+
Sbjct:    6 VFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163          
The following BLAST results are available for this feature:
BLAST of CK938438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
PPIA_HUMAN1.403e-4858.79Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_HEMPU1.403e-4858.43Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_GORGO1.403e-4858.79Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE1.403e-4858.79Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIA_BOVIN1.403e-4858.79Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIF_BOVIN2.392e-4861.15Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_ASPOR4.081e-4860.24Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIA_RAT5.329e-4858.18Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_FELCA5.329e-4858.18Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_CRIGR5.329e-4858.18Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_H01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938438 ID=CK938438; Name=CK938438; organism=Citrus sinensis; type=EST; length=851bp
GGGGGGAACCCCAAAGCGATTGACTGCGAAAAGAGAAACAACGAAGTGNN
NNATGGCTTCGACAAATTTGCTTCCACTCACGATGCTATGGGCTGTTGTC
CTGTTGGCCACTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTT
GAAAGAAATCACAAACAAAGTTTACTTTGACGTTGAGATTGCCGGAAAAC
CTGCCGGACGTATTGTGATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACT
GCAGAAAATTTCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAG
TGGGAAGCCACTCCACTACAAGGGAAGTACGTTTCATAGGATTATTCCCA
GCTTTATGCTTCAAGGAGGTGATTTCACTCTTGGTGATGGAAGAGGTGGA
GAGTCAATTTATGGAGAGAAGTTCCCTGACGAAAATTTCAAACTGAAGCA
CACCGGCCCAGGGCTTTTGTCAATGGCAAATGCTGGGCCAGACACCAATG
GTTCACAATCCTTCATTACAACTGTGACAACTAGCTGGTTGGATGGCAGG
CATGTTGTATTTGGAAAGGTGCTATCGGGGATGGATGTAGTTTACAAGGT
TGAAGCTGAAGGGAGGCAGAATGGCACTCCGAAGAGCAAAGTCGTCATTG
CAGACAGCGGTGAACTTCCTCTGTGATTTCCCCCATAATTATATAATTAC
GCTATACACCTTTTTAATCCTCTCGTCTTTTCAACCTTCATGAAGATACT
CTTAATTTGCCTATTTATCATGTAATAGACATTTTAAAATGTCCTAGGTT
GTTTGCCAAGTTGGTGCTTCATTTTAAGGGGATCCTTTTCTCTGAAAAAA
C
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