CK938438

Overview
NameCK938438
Unique NameCK938438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:21..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 97/172 (56.40%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  155 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE--GRQNGTPKSKVVIADSGE 664
            ++T+K++FD+EI G+ AGRIV+GLFG AVPKT ENF+ L TG KG G       Y+GS FHRIIP+FM+Q             SIYG KF DE+F LKH GPG+LSMANAGP+TNGSQ FI TV T WLD RHVVFG V+ G+DVV ++E++   + + +PK    IA SGE
Sbjct:   79 KVTSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYG-------YQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGE 243          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.961e-48
Identity = 98/171 (57.31%), Postives = 118/171 (69.01%), Query Frame = 2
Query:  155 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKV-EAEGRQNGTPKSKVVIADSGE 664
            ++T+ VYFD++   +  GR+ +GLFGK VPKTAENFRAL TGEKG G       Y+GS FHR+IP+FM+Q            +SIYG +FPDENFKL H  PGLLSMANAGPD+NGSQ FITTV T WLDG HVVFG+VLSG D+V K+ +AE      P   V I  SG+
Sbjct:   24 KVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFG-------YEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQ 187          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.961e-48
Identity = 98/171 (57.31%), Postives = 120/171 (70.18%), Query Frame = 2
Query:  155 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSGE 664
            +IT+KVYFD+    +P GR+VMGL+GK VP+T ENFRAL TGEKG G       Y+GS FHR+I +FM+Q            +SIYG++F DENFKLKHT  GLLSMANAG DTNGSQ FITTV TSWLDG+HVVFG+VL G +++ K+E ++      P   V IA SGE
Sbjct:   32 KITHKVYFDITQGDQPLGRVVMGLYGKTVPETTENFRALATGEKGFG-------YEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGE 195          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.091e-48
Identity = 106/203 (52.22%), Postives = 132/203 (65.02%), Query Frame = 2
Query:   62 TNLLPLTMLWAVVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE--AEGRQNGTPKSKVVIADSGE 664
            T+L  L + + +V+    + + A  S+    +ITNKVYFD++   +  GRIV+GL+GK VP+TAENFRAL TGEKG G       Y+GS FHR+I  FM+Q            +SIYG KF DENFKL+HT  GLLSMANAG DTNGSQ FITT  T WLDG+HVVFG+VL G D+V K++   +GR N  P   V I  SGE
Sbjct:    2 TSLKSLFLSFFLVVALGLALVNA--SEPRGPKITNKVYFDIQHGDESLGRIVLGLYGKTVPETAENFRALATGEKGFG-------YEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGR-NDRPLKDVKIVKSGE 194          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.187e-47
Identity = 95/165 (57.58%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFG+V  GM +V  +E  G +NG    K+ IA+ G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.551e-47
Identity = 97/166 (58.43%), Postives = 113/166 (68.07%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVIADSGE 664
            V+FD+ I G+ AGR+   L+   VPKTAENFRALCTGEKG+G+SGKPL YKGS FHR+I  FM Q            ESIYGEKF DE F + H+ P LLSMANAGP+TNGSQ FIT   T  LDG+HVVFG+V+ G  VV  +E     NG  PK  VVIAD G+
Sbjct:    7 VFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQ 172          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.512e-47
Identity = 95/165 (57.58%), Postives = 110/165 (66.67%), Query Frame = 2
Query:  170 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            V+FD+    +P GR+   LF   VPKTAENFRAL TGEKG G       YKGS+FHRIIP FM Q             SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQ FI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ I+D G+
Sbjct:    6 VFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.892e-47
Identity = 95/149 (63.76%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  218 MGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            M LF   VP+TAENFRALCTGEKG+G   KPLHYKGS+FHR+IP FM Q            ESIYG KF DENF  KHTGPG+LSMANAGP TNGSQ FI T  T+WLDG+HVVFG+V+ GMDVV  +E  G Q+G  K  V IAD G+
Sbjct:    1 MELFQDVVPQTAENFRALCTGEKGMGDR-KPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQ 148          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 7.696e-47
Identity = 98/167 (58.68%), Postives = 113/167 (67.66%), Query Frame = 2
Query:  167 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKG G + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAGP+TNGSQ FITTV T  LDG+HVVFG+V+ G+ V   +E        P    VIA+ GE
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGE 183          
BLAST of CK938438 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 187.578 bits (475), Expect = 7.696e-47
Identity = 104/183 (56.83%), Postives = 121/183 (66.12%), Query Frame = 2
Query:  119 SIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQSFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 664
            S QAK S+ +      +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAG +TNGSQ FITTV T  LDG+HVVFG+V+ GM V   +E    +   P    VIA+ GE
Sbjct:    5 SPQAKPSNPS----NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGE 183          
The following BLAST results are available for this feature:
BLAST of CK938438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
CYPB_VICFA5.329e-4856.40Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB_SCHPO6.961e-4857.31Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_GIBZE6.961e-4857.31Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIB_EMENI9.091e-4852.22Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIA_RABIT1.187e-4757.58Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPID_AMAMU1.551e-4758.43Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIA_MOUSE4.512e-4757.58Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
CYPH_ALLCE5.892e-4763.76Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPID_MOUSE7.696e-4758.6840 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_BOVIN7.696e-4756.8340 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_H01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938438 ID=CK938438; Name=CK938438; organism=Citrus sinensis; type=EST; length=851bp
GGGGGGAACCCCAAAGCGATTGACTGCGAAAAGAGAAACAACGAAGTGNN
NNATGGCTTCGACAAATTTGCTTCCACTCACGATGCTATGGGCTGTTGTC
CTGTTGGCCACTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTT
GAAAGAAATCACAAACAAAGTTTACTTTGACGTTGAGATTGCCGGAAAAC
CTGCCGGACGTATTGTGATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACT
GCAGAAAATTTCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAG
TGGGAAGCCACTCCACTACAAGGGAAGTACGTTTCATAGGATTATTCCCA
GCTTTATGCTTCAAGGAGGTGATTTCACTCTTGGTGATGGAAGAGGTGGA
GAGTCAATTTATGGAGAGAAGTTCCCTGACGAAAATTTCAAACTGAAGCA
CACCGGCCCAGGGCTTTTGTCAATGGCAAATGCTGGGCCAGACACCAATG
GTTCACAATCCTTCATTACAACTGTGACAACTAGCTGGTTGGATGGCAGG
CATGTTGTATTTGGAAAGGTGCTATCGGGGATGGATGTAGTTTACAAGGT
TGAAGCTGAAGGGAGGCAGAATGGCACTCCGAAGAGCAAAGTCGTCATTG
CAGACAGCGGTGAACTTCCTCTGTGATTTCCCCCATAATTATATAATTAC
GCTATACACCTTTTTAATCCTCTCGTCTTTTCAACCTTCATGAAGATACT
CTTAATTTGCCTATTTATCATGTAATAGACATTTTAAAATGTCCTAGGTT
GTTTGCCAAGTTGGTGCTTCATTTTAAGGGGATCCTTTTCTCTGAAAAAA
C
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