CK938437

Overview
NameCK938437
Unique NameCK938437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6274 contig Csv1_Contig6274:6..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938437 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.953e-21
Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  133 PPGFRFHPTDEELVMHYLCRKCLSQPIAV--PIIAEIDLYKFDPWDLPDLALYGEKE--WYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPI----GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEY 498
            P GFRF P DEE+V HYL  K L    +    +I+ +D+  F+PWDLP  ++   ++  WYFF+ ++ KY  G +  R   SG+WK TG    +    G  + +G K+ LVF   K   G KT+W+MHEY
Sbjct:    4 PVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVF---KNRDGSKTDWVMHEY 130          
BLAST of CK938437 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  133 PPGFRFHPTDEELVMHYLCRKCLSQPIAV--PIIAEIDLYKFDPWDLPDLALYGEKE--WYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPI----GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEY 498
            P GFRF PTD E+V  YL  K L    +    +I+ +D+  FDPWDLP  +    ++  WYFF  ++ KY  G R  R   SG+WK TG    I    G  + +G K+ LVF   K   G K++W MHEY
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY 130          
BLAST of CK938437 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  124 LQLPPGFRFHPTDEELVMHYLCRKCLSQPIAVP--IIAEIDLYKFDPWDLPDLALYGEKE--WYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIGQPK-PVGIKKALVFYAGKAPKGEKTNWIMHEY 498
            ++ P G RF PTDEE+V+ YL  K   +  +     I  + + + DPW+LP  +    K+  W FF P++ KY  G +  R   SG+WK+TG  KPI + +  +G KK L+FY  K     K++W++HEY
Sbjct:    1 METPVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFYTSKE---SKSDWVIHEY 127          
BLAST of CK938437 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 64/241 (26.56%), Postives = 109/241 (45.23%), Query Frame = 1
Query:  139 GFRFHPTDEELVMHYLCRKC---LSQPIAVPIIAEIDLYKFDPWDLPDLALYGEKE--WYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPI---------GQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEKKQQVTNRRPNFXXXXXXXXXKKPVVMPSGMDKSTSGGALIPNPASTVTGTGTVNDYMYFDTSDSVPKLNTDSS 819
            GF F P DEELV HYL  K     S+ + V I +E+++  +DPW+L   + Y  ++  WYFF+ R+     G+R +R   SG WK TG    +         G    +G K+ LVF  G+ P   K++W++HE+    +    R         +V+CR+  K    +                       P  +P   + ++S G+++    S    +G+ N Y  +D+++   + N +S+
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAI-SEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDLLPEHQR--------TYVICRLEYKGDDAD-------------ILSAYAIDPTPAFVP---NMTSSAGSVVNQ--SRQRNSGSYNTYSEYDSANHGQQFNENSN 217          
The following BLAST results are available for this feature:
BLAST of CK938437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC4_ARATH5.953e-2140.00NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
NAC5_ARATH6.160e-1840.77NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC3_ARATH3.057e-1737.69NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC1_ARATH4.881e-1526.56NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004442_G11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938437 ID=CK938437; Name=CK938437; organism=Citrus sinensis; type=EST; length=886bp
GGGGAAGCGCCGTCATAGTTCTCAGAGGGTAGGGAGGTTTGGAGATAAGA
ACTAAGCGGAGAGGGTACAATCAGCAACAAGAAGAAGAAATAGAAGGGCA
AAAAAGTCAAAATGACGGCTGAGTTACAGTTACCACCAGGTTTCAGGTTC
CACCCGACCGATGAGGAGCTCGTTATGCACTATTTGTGCCGTAAATGCCT
TTCGCAGCCAATCGCCGTTCCGATTATCGCCGAAATCGATCTTTACAAAT
TTGACCCCTGGGACCTCCCAGATTTGGCCCTGTATGGGGAAAAGGAGTGG
TACTTTTTTACGCCTAGGGATCGGAAGTATCCAAACGGTTCAAGGCCGAA
CCGGGCGGCGGGGAGCGGGTACTGGAAGGCAACAGGAGCCGATAAGCCGA
TTGGCCAGCCGAAGCCCGTTGGAATTAAGAAGGCTCTTGTTTTTTACGCC
GGAAAAGCGCCTAAAGGAGAGAAAACCAACTGGATTATGCACGAGTATCG
GTTAGCTGACGTGGATCGCTCGGCTCGTAAGAAGAACAGCTTAAGGCTGG
ACGATTGGGTGCTGTGTCGCATATACAACAAGAAGGGATCTATTGAGAAA
AAACAGCAGGTCACTAATCGGAGGCCGAATTTTACGGAGACGGAGACGGA
GACGGAGGAGAAGAAACCGGTGGTTATGCCAAGTGGCATGGACAAGTCAA
CGTCAGGAGGAGCACTGATTCCGAATCCGGCGTCGACCGTAACAGGAACG
GGAACAGTGAATGATTACATGTATTTTGACACGTCGGATTCGGTGCCGAA
GCTGAACACGGACTCGAGTTGCTCGGAGCACGTGGTGTCACCGGAGTTCA
CGTGCGAGGTGCAGAGCGAGCNTNAAATGCAACCCT
back to top