CK938436

Overview
NameCK938436
Unique NameCK938436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  209 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*T 643
            + KE+  L  DPP      P  ED+     +I GP  +PYAGGVF + +    D+P  PP+  F TK+FHPN+   G IC+++LK  W   L +  VLL+I  LL  PNP+  L  E   +   D  +Y + A   T+ +AMG T
Sbjct:   16 VYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMGGT 160          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  170 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            + +S VE  +    K++ +E+  L  DPP         ED+   QA+I GP  +PY GG+F + +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W P L I +VLL++  LL  PNP+  L  E   +     + Y   A+ +T+ +A
Sbjct:    3 TTSSNVENFSPQIIKQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  170 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            S  S VE ++    +++++EL++++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  170 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            S  S VE ++    +++++EL++++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  170 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            S  S VE ++    +++++EL++++  PP          D+   QA I GP  +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 52/136 (38.24%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  194 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 577
            M S+ ++ E + L ++P  +        DM  W   + GPPD+ Y GG+F   + FPP+YP+ PP++ F ++++HPNI  +G +C+ IL     +EQ   WSPA  I  +LLS+ SLL +PNPD P   + A  Y+
Sbjct:    1 MVSRFLMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYR 136          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  185 VETMASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            + ++   R+ +E K  ++D P    A P        D+ +W+  I G P + + GG++ +T+ FP +YP +PPK  F   +FHPN+  +G++CL IL E+  W PA+TI ++LL I  LL DPN   P   E   M+K D+ +YE   R+  ++ A
Sbjct:    1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 53/148 (35.81%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  197 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 598
            +S  + K+L D+++ P    SAG V + D++ W+  ++GPPD+ Y GG F   + FP DYP KPPK+ F ++++HPNI+  G++C+ IL             +E+W P  T+  +LLS+ S+LTDPN + P   + A M + +  +++
Sbjct:    4 SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  185 VETMASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 598
            + + A   + K+LKDL K P    SAG V E ++F W  TI+GPPD+ Y GG F   + FP +YP  PP V F + ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  R++++
Sbjct:    1 MNSQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFK 152          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  170 SAASQVETMAS---KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            S  S VE ++    +++++EL++++  PP          D+   QA I GP  +PYA GVF V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M     + Y   AR  T+ +A
Sbjct:    3 SQYSNVENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
The following BLAST results are available for this feature:
BLAST of CK938436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2S_DANRE1.018e-2338.62Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2S_NEMVE1.330e-2336.31Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBE2S_DROSI1.330e-2336.94Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE1.330e-2336.94Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME1.330e-2336.94Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC_ASFWA1.330e-2338.24Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_SCHPO1.330e-2335.26SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_CAEEL1.330e-2335.81Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC13_ARATH1.736e-2336.18Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2S_DROYA2.268e-2337.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938436 ID=CK938436; Name=CK938436; organism=Citrus sinensis; type=EST; length=767bp
GGGGACCGAATCCCGATTCCCCAAAGTTCCTCTTGCATTTAATTTTTCTC
CTGCGTCCATTTTTCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTT
TGTTTCTAATTTTCCCGATCTCCCTGTCTCCCTCACGAATCCACATATTG
CAAGGCCAAATCAGGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGT
CGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACA
TCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGAC
AATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTA
CCATCCATTTTCCCCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTC
AGGACAAAGGTATTTCATCCTAACATAAATAGCAATGGGAGCATTTGCCT
TGACATCTTGAAGGAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGT
TGCTATCAATCTGTTCATTATTGACGGATCCAAATCCCGATGATCCGTTG
GTACCAGAAATTGCTCACATGTACAAGACCGACAGGAACAAGTACGAGAC
AACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGGCTAAACCTGGGTTA
TGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATG
TATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGACCATAAGAAAGGTC
CACTACATCCCCCGAAT
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