CK938436

Overview
NameCK938436
Unique NameCK938436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  269 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            + + M  +    +GP D+PY  GV+ + +  P +YP+K P + F  K+FHPNI+ ++GSICLD++   WSP   +  ++   I  LL +PN  DPL  E A +   D+  YE   + +  KYA
Sbjct:   25 INDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEYIDKYA 147          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  227 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            DL K   +      + + M  +     GP DS Y GGV+ V +     YP+K P + F  K++HPN++  +GS+CLD++ + WSP   +  +  + +  LL  PNP DPL  E A +   D+N YE   + + ++YA
Sbjct:   11 DLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*TWVMVC 658
            ++  G   +S+  + A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E   +   +   +G T+   C
Sbjct:   15 ESAGGTKGSSKKASAAQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERC 181          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*TWVMVC 658
            ++  G   +S+  + A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E   +   +   +G T+   C
Sbjct:   15 ESAGGTKGSSKKASAAQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERC 181          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*TWVMVC 658
            ++  G   +S+  + A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E   +   +   +G T+   C
Sbjct:   15 ESAGGTKGSSKKASAAQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERC 181          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG*TWVMVC 658
            ++  G   +S+  + A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E   +   +   +G T+   C
Sbjct:   15 ESAGGTKGSSKKASAAQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERC 181          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 51/151 (33.77%), Postives = 85/151 (56.29%), Query Frame = 2
Query:  197 ASKRILKELKDLQKDPP----TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 634
            ASKR+ KEL+DLQK+ P      CS     +++  W A ++ P   PY    F + I FP +YPF+PP V F T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D   ++  A+ +T ++ +
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  194 MASKRILKELKDLQKD-PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 634
            MASKR+ KEL+ L K+ PP          ++  W   ++ P   PY    F V I FP +YPFKPP + F TK++HPN+  +G +CL ++  E W P     +VL ++  L++ PN ++P+  E+A +   +   +   A  +T K+ +
Sbjct:    2 MASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEFTLKFGV 149          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.682e-18
Identity = 41/128 (32.03%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  278 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL------------DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 625
            ++F WQ TI+GPP++ Y GG F   + FP +YP  PP V F ++++HPN+  +G +C+            ++  E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  +++++   R   +K
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.197e-18
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  155 AKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 526
            + SG  +   +  +A+ R+ KEL + Q +PPT      V +++  W   ++G P + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:    2 SSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKH-KVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
The following BLAST results are available for this feature:
BLAST of CK938436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC8_YEAST2.595e-1936.59Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC4_WHEAT2.595e-1933.58Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_XENLA2.595e-1931.18NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE3.389e-1930.77NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN3.389e-1930.77NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN3.389e-1930.77NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UB2L6_BOVIN3.389e-1933.77Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UB2L6_MOUSE9.860e-1933.56Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UBC7_WHEAT1.682e-1832.03Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC16_ARATH2.197e-1836.80Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004442_G10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938436 ID=CK938436; Name=CK938436; organism=Citrus sinensis; type=EST; length=767bp
GGGGACCGAATCCCGATTCCCCAAAGTTCCTCTTGCATTTAATTTTTCTC
CTGCGTCCATTTTTCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTT
TGTTTCTAATTTTCCCGATCTCCCTGTCTCCCTCACGAATCCACATATTG
CAAGGCCAAATCAGGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGT
CGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACA
TCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGAC
AATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTA
CCATCCATTTTCCCCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTC
AGGACAAAGGTATTTCATCCTAACATAAATAGCAATGGGAGCATTTGCCT
TGACATCTTGAAGGAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGT
TGCTATCAATCTGTTCATTATTGACGGATCCAAATCCCGATGATCCGTTG
GTACCAGAAATTGCTCACATGTACAAGACCGACAGGAACAAGTACGAGAC
AACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGGCTAAACCTGGGTTA
TGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATG
TATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGACCATAAGAAAGGTC
CACTACATCCCCCGAAT
back to top