CK938436

Overview
NameCK938436
Unique NameCK938436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.066e-17
Identity = 47/143 (32.87%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  215 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 634
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   ++W+   T+S +LL++  +L++P  ++P+  E A +   D + Y T  + + +   M
Sbjct:   11 RDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLFNRPLQM 153          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.229e-17
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  194 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 418
            MA K I KE  +L +DP   CSAGPV +DM HWQATI  P DS Y GGVF   + FP DY FKPPK+ F   ++H
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFKPPKIKFTNGIYH 73          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-16
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            +  +G + A+   ++  + ++KE+ +L+ + P++C    P    + H+Q  I  P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  + A  +  D+  +    + + + YA
Sbjct:   18 RTPAGSNDAAHRVSIRDRLLIKEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  206 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 634
            R+ +E+ D+ K+           +D+  W+    GP  +PY  G +L  I F  +YP   P + F T + H NIN+ G +C  IL   ++P + IS +L  I  LL +P+ +DPL   +A +Y      YE     +  K+A+
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  197 ASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARS 613
            A  RI K++ DL+     S S   P+  ++ H +   + P +  Y GG F   I    +YP  PPKV    K++HPNI+  G++CL+IL++ W+P L ++ +L+ +  L   PN +DPL  E A     D   + +  R+
Sbjct:   24 AQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT 160          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            +A +  S +++  ++  K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   18 RASASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  206 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG-PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYE 598
            R  +EL D +K  P+         ++F W   +M    DS Y GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y+ +  +Y+
Sbjct:   14 RQYRELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYK 157          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  161 SGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 526
            S  S    +  +A+ R+ KE  + Q +PP+      V++++  W   + G P + YA   + + + FP  YP + P+V F+     HP+I SNG ICLD+L + WSPA+ +S + LSI S+L+
Sbjct:    4 SSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 49/167 (29.34%), Postives = 80/167 (47.90%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            +  +  S +++  ++  K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   18 RTSASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CK938436 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  152 KAKSGGSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 631
            +A +  S +++  ++  + ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   18 RASATASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of CK938436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2U_MACFA7.066e-1732.87Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
U2D2L_HUMAN9.229e-1756.00Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBE2F_DANRE1.205e-1630.36NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBC4_MIMIV2.056e-1630.77Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC12_SCHPO2.056e-1632.86NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2F_RAT2.685e-1629.94NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBC3_YEAST4.580e-1634.03Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC17_ARATH7.813e-1634.96Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UB2FA_MOUSE7.813e-1629.34NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_BOVIN1.020e-1528.74NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938436 ID=CK938436; Name=CK938436; organism=Citrus sinensis; type=EST; length=767bp
GGGGACCGAATCCCGATTCCCCAAAGTTCCTCTTGCATTTAATTTTTCTC
CTGCGTCCATTTTTCCTTCGCCGTTCAATTTTTTTAAGTATCTCAGTTTT
TGTTTCTAATTTTCCCGATCTCCCTGTCTCCCTCACGAATCCACATATTG
CAAGGCCAAATCAGGAGGATCTGCTGCTTCTCAGGTTGAAACTATGGCGT
CGAAACGGATCTTGAAGGAGCTCAAAGATTTGCAGAAGGATCCTCCTACA
TCATGCAGTGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAGGCGAC
AATCATGGGTCCTCCAGATAGTCCGTATGCTGGGGGTGTTTTTCTAGTTA
CCATCCATTTTCCCCCAGACTATCCATTCAAGCCTCCCAAGGTAGCATTC
AGGACAAAGGTATTTCATCCTAACATAAATAGCAATGGGAGCATTTGCCT
TGACATCTTGAAGGAACAATGGAGTCCTGCTCTTACCATTTCCAAGGTGT
TGCTATCAATCTGTTCATTATTGACGGATCCAAATCCCGATGATCCGTTG
GTACCAGAAATTGCTCACATGTACAAGACCGACAGGAACAAGTACGAGAC
AACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGGCTAAACCTGGGTTA
TGGTGTGTGAGGGGGTTCCTTTTCTTTTTAATTCTGGTTTCGAGTTAATG
TATGAATATTCTGTCTGTTCAATCCTAAAAAGTGGACCATAAGAAAGGTC
CACTACATCCCCCGAAT
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