CK938434

Overview
NameCK938434
Unique NameCK938434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938434 vs. ExPASy Swiss-Prot
Match: Y4NA_RHISN (Uncharacterized peptidase y4nA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02410 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.906e-27
Identity = 71/194 (36.60%), Postives = 111/194 (57.22%), Query Frame = 3
Query:  201 DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE-EWGDP 776
            D     ++KI +    FD      ++ WA++ DGT++P  +V RK+ VKLDG++P +LY YG ++I   P++++    L L++G  +A+A IRGGGE G +W++ G    ++  + DF A A+ LI     +   L I G S GGLL+G  +  RPDL+ A V  VP +D    M++ T     A W+ E+G P
Sbjct:  443 DAATGQVEKITSTPARFDAGGLQAQQFWATSKDGTKVPYFLVARKD-VKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPKWHDAGLKTNRQRVYDDFQAVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNAVVIQVPLLD----MVNFTRMSAGASWQAEYGSP 631          
BLAST of CK938434 vs. ExPASy Swiss-Prot
Match: PPCEL_CHICK (Prolyl endopeptidase-like OS=Gallus gallus GN=PREPL PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.931e-26
Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = 3
Query:  261 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 776
            N  T R  A + D T +PI + +  N  +L    PLL++ YG+Y I  + +F   +L L++ G+I A   +RGGGELG +W+++G    K     D  AC   L +  +   +   +   SAGG+L GA+ N  P+L +A V   PFVDVL TM+   +PL+  E EEWG+P
Sbjct:  456 NCHTTRLLAKSKDETLVPITVFHNVNSKELHRK-PLLVHVYGAYGIDLNMSFKEEKLMLIEEGWILAYCHVRGGGELGLRWHKDGCQQNKLKGLHDLKACIMLLHELGFSQPKYTALTAVSAGGVLAGAICNSDPELIRAVVLQAPFVDVLNTMMKTHLPLSIEEQEEWGNP 626          
The following BLAST results are available for this feature:
BLAST of CK938434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
Y4NA_RHISN5.906e-2736.60Uncharacterized peptidase y4nA OS=Rhizobium sp. (s... [more]
PPCEL_CHICK2.931e-2637.79Prolyl endopeptidase-like OS=Gallus gallus GN=PREP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938434 ID=CK938434; Name=CK938434; organism=Citrus sinensis; type=EST; length=783bp
GGGGGGGTCTGCAAAAAATAACTACTTATCGTCTTCCAGCTGTAGGGGAG
CCACTCAAAAGCCTCCAAGGTGGCAAGTCTGTTGAATTTATAGATCCAGT
ATACTCAATCGATCCATCAGAATCAGTGTTTTCATCCAGGATTTTGCGGT
TTCATTATAGCTCATTGAGGACACCTCCTTCCGTATATGATTATGATATG
GACATGGGGATTTCTGTTTTGAAGAAAATTGAAACTGTCTTGGGAGGTTT
TGATACAAACAATTATTTTACTGAAAGGAAGTGGGCCAGTGCTTCAGATG
GCACACAGATTCCTATATGCATTGTCTATCGGAAGAATCTTGTGAAGCTT
GATGGATCAGATCCATTACTACTTTATGGCTATGGTTCGTATGAGATCTG
CAATGATCCTGCTTTCAACTCATCTCGGCTTTCTCTATTAGATCGTGGTT
TCATCTTTGCGATAGCTCAGATTCGGGGGGGTGGTGAATTGGGAAGACAG
TGGTACGAGAATGGGAAGTTTTTAAAGAAAAAGAATACCTTCACTGACTT
TATTGCCTGTGCTGAGTACTTGATAAAAAATTGCTACTGTACAAAGGAAA
AACTGTGTATTGAAGGAAGAAGTGCTGGGGGATTGCTTATTGGTGCTGTC
CTTAACATGAGGCCTGATTTGTTCAAGGCTGCAGTTGCAGCAGTCCCATT
CGTAGATGTCCTGACCACAATGCTGGATCCAACTATTCCTCTTACAACTG
CTGAGTGGGAGGAATGGGGTGATCCCCGGAAGG
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