CK938373

Overview
NameCK938373
Unique NameCK938373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10319 contig Csv1_Contig10319:120..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.882e-35
Identity = 89/205 (43.41%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   58 AATSYYFLLLILTFVTATLDQANSQ-------LSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPN-NNSARGFNVVDQIKANLEKAC-PRVVSCADILAIATRDSVVVFGGPSWKVRLG-XXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTV 642
            AA +   ++LI +  TAT    N++       LS ++YK +CPKA SIVR+ +  A++ +  + A LLRLHFHDCFV GCD SVLLD +A   GE+ A PN       F  ++ I   L K C   VVSC+D+LA+A RDSVVV GGPS+KV LG                +PPPT+ + AL++  S   L   ++VAL+GGHT+
Sbjct:    9 AAAAVAAVVLICSSSTATAADGNARQPPLAPGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35
Identity = 87/242 (35.95%), Postives = 126/242 (52.07%), Query Frame = 1
Query:  130 QLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTA-NFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSV-VVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRG---NDNVLANLDRQTPTCFDNLYYKNLL 819
            +L  N+Y ++CP A  IVR  +   ++    +   LLR+H+HDCFV GCD S+LLD  A   + EK A P N S  GF ++D+IK  LEK CP  VSCADIL +A RD+V   F  P W V  G               +P   +N + L   F+   L + ++VAL+G HT+G A C  F   + N       D +++ S+A  L+  C  +    N + +  +D   P  FD+ Y+ +LL
Sbjct:   45 KLKMNFYHNSCPGAEDIVRQIVWKKVEANRSLAPKLLRVHYHDCFVRGCDASLLLDSVAGKAVSEKEARP-NLSLSGFEIIDEIKYILEKRCPNTVSCADILTLAARDAVSYEFERPLWNVFTGRVDGRVSLATEAARDLPSAGANFTTLQKLFAESDLDVVDLVALSGAHTIGIAHCGVFGRRLLNFTGKGDTDPSLNPSYASFLKSECSDKSLRLNPSAVVGMDPTGPLAFDSGYFVSLL 285          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.211e-33
Identity = 94/258 (36.43%), Postives = 133/258 (51.55%), Query Frame = 1
Query:   79 LLLILTFVTATLDQANSQLSTNYYKSTCPK----ALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNN-SARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSN------IDTSFARSLQQRCPRRGNDNVLANL-DRQTPTCFDNLYYKNL 816
            L L +   +  L QAN  LS++YY  TCP+     + IV    IAA    T VG   LRL FHDC V+GCD S+L+  T     E+ A  N +     F+V+ +IK  +E  CP +VSC+DIL  ATR  + + GGP   V+ G               +  P   +  +IS F + GL+++ MVAL G HT+G + C  F   I+N S+      ++  +A  L++ C    ND  ++   D  TP  FDN+YYKNL
Sbjct:    6 LCLFILVSSPCLLQAN--LSSDYYTKTCPEFEETLVQIVTDKQIAA--PTTAVGT--LRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQEMVALVGAHTIGFSHCKEFASRIFNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKNL 257          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.523e-33
Identity = 79/238 (33.19%), Postives = 122/238 (51.26%), Query Frame = 1
Query:  130 QLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQ--TPTCFDNLYYKNL 816
            QL   +Y   C    +IV   +  A   ++ +  +++RL+FHDCF NGCD S+LLD + +   EK A PN  S RG+ V+D IK+ +EK C RVVSCADI+A+ATRD V +  G   +  +                +P P   ++   + F  + LSL +MV L GGHT+G   C+     +YN       D ++D      L  +CP+  + + + +LD+   +    D  +YK +
Sbjct:   27 QLRLGFYSQNCQNVENIVSKVVGEAFIKDSSIAPAMIRLYFHDCFSNGCDASLLLDGSNS---EKKASPNL-SVRGYEVIDDIKSAVEKECDRVVSCADIIALATRDLVTLASGGKTRYEIPTGRLDGKISSALLVDLPSPKMTVAETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPDPSMDPKLVEELSAKCPKSSSTDGIISLDQNATSSNTMDVSFYKEI 260          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 80/251 (31.87%), Postives = 119/251 (47.41%), Query Frame = 1
Query:   82 LLILTFVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN--DSNIDTSFARSLQQRCPRRGNDNVLANL---DRQTPTCFDNLYYKNLL 819
            L  L+  +  + +A   L  N+YK TCP+A  IVR  +    K       S LR  FHDC V  CD S+LLD T   +GEK     +   R F  +++IK  LE+ CP VVSC+DIL ++ R+ +   GGP   ++ G               +P    ++S ++  F + G+    +VAL G H+VG+  C      +Y   D +++      +  +CP    D         DR TP   DN YY+N+L
Sbjct:   14 LWALSATSEAVTEAEPGLMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEKEH-DRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 263          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.346e-31
Identity = 91/272 (33.46%), Postives = 137/272 (50.37%), Query Frame = 1
Query:   73 YFLLLILTFVT----ATLDQANS-----QLSTNYYK--STCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDN-----VLANLDRQTPTCFDNLYYKNLL 819
            +F LL L  ++    AT++ A       +L  +YYK  +TC  A + +R  +    KN++ +   LLRL + DC VNGCDGS+LL    +   E+TA P N    GF ++D+IK  LE  CP VVSCADIL +ATRD+V + G PS+ V  G               +P P+ ++   ++ F ++GL + +M  L G H++GK  C+     +YN       D  ++T+    L+  CP R         V  N D  +   F + YY  +L
Sbjct:    6 FFPLLALVVISLAGKATVEAATGLNPPVKLVWHYYKLTNTCDDAETYIRYQVEKFYKNDSSIAPKLLRLLYSDCMVNGCDGSILLQGPNS---ERTA-PQNRGLGGFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTG--RRDGGTLNADAVDLPSPSISVDESLAYFKSKGLDVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCPPRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVL 271          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.253e-30
Identity = 82/271 (30.26%), Postives = 133/271 (49.08%), Query Frame = 1
Query:   40 AEVLDMAATSYYFLLLILT--FVTATLDQANSQLSTNYYKSTCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLG-XXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN----DSNIDTSFARSLQQRCPRRGNDNVLANL----DRQTPTCFDNLYYKNLL 819
            ++V +  A S + ++ +L    +   ++  N  LS +YY+ TCPK   IVR+ + +    +    A+LLRL FHDC V GCD S+LL+   +    +     N   R  ++V  IK +LE  CP+ VSC+D++ +A RD+V + GGP   V LG                +PP T+++   +S F+ +G++++  VA+ G HT+G   C +      N      N+D  F   L+  CP     +  A      + QT   FD  YY + +
Sbjct:    5 SKVAESTAASCFLVMSLLCSCIIGDQMETNNEGLSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIEESVAIMGAHTIGVTHCNNVLSRFDNANATSENMDPRFQTFLRVACPEFSPTSQAAEATFVPNDQTSVIFDTAYYDDAI 275          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 83/244 (34.02%), Postives = 128/244 (52.46%), Query Frame = 1
Query:  130 QLSTNYYK--STCPKALSIVRAGIIAAIKNETRVGASLLRLHFHDCFVNGCDGSVLLDDTANFIGEKTAVPNNNSARGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCP---RRGNDN--VLANLDRQTPTCFDNLYYKNLL 819
            +L+ +YYK  +TC  A + VR  +    KN+  +   LLRL + DCFV+GCD SVLL+   +   EK A P N    GF ++D+IK  LE+ CP VVSCADIL +ATRD+V + G PS+ V  G               +P P+ +    +S F ++GL++ +M  L G H++G+  C+     +YN          ++  F   + ++CP   R+G  +  V  N D  +   F + +Y  +L
Sbjct:   34 KLTWHYYKVYNTCENAENFVRHQVEIFYKNDKSIAPKLLRLLYSDCFVSGCDASVLLEGPNS---EKMA-PQNRGLGGFVLIDKIKIVLEQRCPGVVSCADILNLATRDAVHLAGAPSYPVFTG--RRDGLTSDKQTVDLPSPSISWDQAMSYFKSRGLNVLDMATLLGSHSMGRTHCSYVVDRLYNYNKTGKPSPTMNKYFLSEMAKQCPPRTRKGQTDPLVYLNPDSGSNHSFTSSFYSRIL 271          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PERX_LUPPO (Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.424e-19
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  544 PPPTSNLSALISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCP-RRGNDNVLANLDRQTPTCFDNLYYKNLL 819
            P P+S+L+ L + F+A+GL+  ++  L+GGHT+G++ C  F+  IYND+NIDT+FA S Q  CP   G +  LA LD  TP  FDN YYK+L+
Sbjct:    2 PGPSSDLTTLTTKFAAKGLTPSDLTVLSGGHTIGQSECQFFKTRIYNDTNIDTNFATSRQANCPFSAGGETNLAPLDSLTPNRFDNNYYKDLV 94          
BLAST of CK938373 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  352 RGFNVVDQIKANLEKACPRVVSCADILAIATRDSVVVFGGPSWKVRLGXXXXXXXXXXXXXXXIPPPTSNLSALISSF 585
            RGF V+D IK  +E  C + VSCADIL +A RDSVV  GGPSW V LG               +P   S+ S L ++F
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSSRSELEAAF 80          
The following BLAST results are available for this feature:
BLAST of CK938373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PER1_SORBI2.882e-3543.41Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER24_ARATH8.385e-3535.95Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER6_ARATH1.211e-3336.43Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER60_ARATH3.523e-3333.19Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER42_ARATH2.284e-3231.87Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER61_ARATH7.346e-3133.46Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER29_ARATH1.253e-3030.26Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER26_ARATH1.173e-2834.02Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PERX_LUPPO8.424e-1948.39Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 ... [more]
PERX_WHEAT6.465e-1144.87Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_F11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938373 ID=CK938373; Name=CK938373; organism=Citrus sinensis; type=EST; length=820bp
GGGACGTATTTATAAAGGCAAAAATCTCTCTTGACGACTGCAGAAGTGCT
AGATATGGCAGCAACAAGTTACTACTTTCTCCTTCTTATACTTACTTTTG
TCACTGCAACTCTTGATCAAGCCAACTCCCAACTCTCAACAAACTACTAC
AAATCCACATGCCCAAAAGCATTGTCTATTGTTCGGGCAGGGATTATAGC
TGCTATAAAAAATGAAACACGCGTAGGGGCGTCTTTACTTCGACTTCATT
TCCACGACTGCTTTGTCAATGGCTGCGATGGATCGGTACTGTTGGATGAT
ACGGCCAATTTCATAGGAGAGAAAACAGCAGTTCCTAACAATAACTCGGC
CAGAGGGTTCAACGTGGTGGATCAGATTAAAGCTAATCTGGAGAAAGCAT
GCCCCCGTGTTGTTTCGTGTGCAGATATTCTTGCCATTGCCACACGCGAT
TCAGTTGTTGTTTTCGGAGGTCCTTCATGGAAAGTTAGATTGGGAAGAAG
AGATTCTACCACTGCTAGCAGGGCAGCGGCAAATACCTCCATCCCTCCAC
CCACTTCTAATTTGAGTGCTCTCATATCAAGCTTCTCGGCACAGGGTCTC
TCATTAAAGAACATGGTGGCTCTTGCTGGTGGACATACGGTAGGCAAGGC
AAGGTGCACATCATTTCGAGGACACATTTACAACGATTCCAATATTGACA
CCAGCTTCGCCAGGTCCTTGCAGCAGAGATGCCCAAGAAGAGGAAATGAC
AATGTTCTGGCAAACCTTGACCGTCAAACTCCAACGTGCTTTGACAATTT
ATATTACAAGAATCTGTTGA
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