CK938368

Overview
NameCK938368
Unique NameCK938368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938368 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 40/157 (25.48%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  181 RFIKTSCSSTTYPTLCYKSLARHAS--LIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSVGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAHMTSNALALINSY 645
            + I+T CSST Y  +C K+L           +P     +++    A+ +    V+ K+         + DA++ C   + D+ +E   S+ ++ + + ++FE  + D+++W+SA ++ + TC DGFE+  +  + V+  +     +TSN+LALI ++
Sbjct:  107 KIIQTLCSSTLYMQICEKTLKNRTDKGFALDNPTTFLKSAIE---AVNEDLDLVLEKVLSLKTENQDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGFEEGNLKSE-VKTSVNSSQVLTSNSLALIKTF 259
The following BLAST results are available for this feature:
BLAST of CK938368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PME13_ARATH4.668e-1125.48Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938368 ID=CK938368; Name=CK938368; organism=Citrus sinensis; type=EST; length=792bp
GGGGACATAACTCAATCCTCACTTCATTTGCTCATAATTTCAAAGGTCAG
AGAGAGAGACATGGAAGGTTCATCCTCAAATCATATGCTTAAATACTTTC
TCATTTTACTAGCCATTTTTTCCTACTTAAATTCAAGCTCAGCCGCTAGA
CATGGCCCCTCTAAAATTGCTGCTGACAGAAGGTTCATCAAAACATCTTG
CAGTTCAACAACTTATCCAACACTTTGCTATAAATCCCTTGCTAGACATG
CAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCAAC
GTGACCCTTGCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGATGTC
GAAAAGCCCTGGAATGAAGCCTAGAGAGGTGGATGCCATGCAAGATTGTT
TGGAGGAGCTGAGTGATTCAGTTGATGAGCTCAGAAAGTCCGTTGGCGAA
ATGGGTCTGATCAAAGCTTCAAATTTTGAACTTACAATGAGTGATATACA
GACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGGAT
TTGAGAAGAATACGGTGAATGGGAAAGTTGTGAGGGCCCAGATTGTGAAG
ATTGCTCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGCTTC
TCTTCGCGGTTAGATATTCTCATGATTAGCTCCATTATTGTAAGTGATTT
ATGCAGTATTAATCCTGCCTGTGGAGATCAGATTTATGAAAATGTAATCT
TTATTGCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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