EL492707

Overview
NameEL492707
Unique NameEL492707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length156
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:1290..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.273e-15
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIK IAECLADELI
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELI 178          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADELI
Sbjct:  140 VRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELI 184          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI LLTTGARE++FRN+K+IAECLA+ELI
Sbjct:  143 VRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELI 187          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.598e-14
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADELI
Sbjct:  120 VRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELI 164          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.127e-13
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1
Query:   10 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+ELI
Sbjct:  156 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELI 199          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.127e-13
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+I
Sbjct:  133 VRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEII 177          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.127e-13
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+I
Sbjct:  133 VRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEII 177          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.882e-11
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE++
Sbjct:   78 VRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIV 122          
The following BLAST results are available for this feature:
BLAST of EL492707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RS5_MOUSE2.273e-1588.8940S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_PODCA8.637e-1584.4440S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_NEUCR8.637e-1584.4440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_DICDI5.598e-1477.7840S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_YEAST2.127e-1386.3640S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5B_SCHPO2.127e-1375.5640S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO2.127e-1375.5640S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_ENTHI9.882e-1166.6740S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC5860 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5860, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492707 ID=EL492707; Name=EL492707; organism=Citrus sinensis; type=EST; length=156bp
CGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTGTGAA
TCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTTTTCGTA
ACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTACTAGGAAC
TTCATC
back to top