CN187565

Overview
NameCN187565
Unique NameCN187565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGBA_PHAVU (Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H + GV N+ F V K +LL+T+K+AV + W+ ++ +A   AYD+L AAIK
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDPT--NPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKGVSNDQFLVVKEALLKTLKQAVGDKWTDQLSTALELAYDELAAAIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB2_SOYBN (Leghemoglobin C2 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    LG++H +  + +  F V K +LL+TIKEAV + WS E+ SAW  AYD+L AAIK
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDP--SNPKLTGHAEKLFGLVRDSAGQLKANGTVVADAA----LGSIHAQKAITDPQFVVVKEALLKTIKEAVGDKWSDELSSAWEVAYDELAAAIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB3_SOYBN (Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AFT++QEALV  S+   K N  +  + F+  I E AP A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V +  +    LG++H +  + +  F V K +LL+TIKEAV + WS E+ SAW  AYD+L AAIK
Sbjct:    3 AFTDKQEALVSSSFEAFKTNIPQYSVVFYTSILEKAPVAKDLFSFLANGVDPT--NPKLTGHAEKLFGLVRDSAGQLKASGTVVIDAA----LGSIHAQKAITDPQFVVVKEALLKTIKEAVGDKWSDELSSAWEVAYDELAAAIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB2_VICFA (Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = -3
Query:  204 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSN-VPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEM 647
            FT  QEALV  SW    +N     + F+  I E AP A+ +FS L+D+N +PL  N  +  H   VF M  ++A QL+  G+V + ++T   LG VH +  V   HF V K +LL+TIKEAV + WS E+ +AW  AYD L  AI  EM
Sbjct:    3 FTLRQEALVNSSWEAFNQNLPLFSVLFYTFILEKAPIAKNMFSVLKDANEIPL-ANPSINAHTEMVFEMVRDAAAQLQTTGQVVLGDTT---LGVVHTQKRVDGLHFMVVKEALLKTIKEAVGDKWSEELSNAWEIAYDGLAVAIMKEM 147          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGBA_SOYBN (Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 63/146 (43.15%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AFTE+Q+ALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V    +    LG+VH +  V +  F V K +LL+TIK AV + WS E+  AW  AYD+L AAIK
Sbjct:    3 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLANGVDPT--NPKLTGHAEKLFALVRDSAGQLKASGTVVADAA----LGSVHAQKAVTDPQFVVVKEALLKTIKAAVGDKWSDELSRAWEVAYDELAAAIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB_PSOTE (Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  213 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 647
            FTE+QEALV  S+   K N  +  + F+  I E AP+A+ LF FL +   P   N KL  HA  +F +  +SA QLR  G V    +    LG++H + GV +  F V K +LL+T+KEAV + WS E+ +AW  AY++L AA+K
Sbjct:    4 FTEKQEALVNSSYEAFKANVPQYSVVFYTSILEKAPAAKDLFPFLANGVDPT--NPKLIGHAEKLFGLVHDSAAQLRAKGAVVADAA----LGSLHAQKGVTDPQFVVVKEALLKTVKEAVGDKWSDELSNAWEVAYNELAAALK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB1_SOYBN (Leghemoglobin C1 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 64/146 (43.84%), Postives = 85/146 (58.22%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AFTE+QEALV  S+   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    L ++H +  V +  F V K +LL+TIKEAV   WS E+ SAW  AYD+L AAIK
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYNSILEKAPAAKDLFSFLANGVDPT--NPKLTGHAEKLFALVRDSAGQLKTNGTVVADAA----LVSIHAQKAVTDPQFVVVKEALLKTIKEAVGGNWSDELSSAWEVAYDELAAAIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB2_PHAVU (Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H +  + +  F V K +LL+T+KEAV + W+ E+ +A   AYD+  A IK
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKALNDSQFLVVKEALLKTLKEAVGDKWTDELSTALELAYDEFAAGIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB1_VIGUN (Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AF+++QEALV  ++   K N  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KEAV + WS E+ +A   AYD+L AAIK
Sbjct:    3 AFSDKQEALVNGAYEAFKANIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKEAVGDKWSDELGTAVELAYDELAAAIK 142          
BLAST of CN187565 vs. ExPASy Swiss-Prot
Match: LGB2_VIGUN (Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  213 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIK 650
            AF+++QE LV  ++   K +  +  + F+  I E AP+A+ LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KEAV + WS E+ +A   AYD+L AAIK
Sbjct:    3 AFSDKQEGLVNGAYEAFKADIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKEAVGDKWSDELGTAVELAYDELAAAIK 142          
The following BLAST results are available for this feature:
BLAST of CN187565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGBA_PHAVU8.845e-2443.84Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2[more]
LGB2_SOYBN2.574e-2343.84Leghemoglobin C2 OS=Glycine max PE=1 SV=2[more]
LGB3_SOYBN3.361e-2343.15Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2[more]
LGB2_VICFA7.488e-2342.95Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1[more]
LGBA_SOYBN1.668e-2243.15Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2[more]
LGB_PSOTE3.716e-2242.07Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 ... [more]
LGB1_SOYBN8.279e-2243.84Leghemoglobin C1 OS=Glycine max PE=2 SV=2[more]
LGB2_PHAVU1.412e-2141.78Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3[more]
LGB1_VIGUN1.322e-1941.78Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 S... [more]
LGB2_VIGUN1.461e-1840.41Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187565 ID=CN187565; Name=CN187565; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTTTTTTTTTCAAACATTAGGAACAAACTTTTGTTATCACATTT
TCAAGAGTTGAACACAAGAGATTATACAAAAAGGCACAAGAAACACACGT
GGGTACCAATGCAAAGATTAACAAATAAACAATGCTCTTTTTGAAATTCT
TTAATATTACAGGGGAAGAGAAATTTGTTCAGGAAACTCTAAGAGGAGGG
CTTCATCTCCGACTTAATGGCTGCAACCAATTGGTCGTAAGCTTCTGACC
AGGCACTCTTCATTTCTGGCGACCACATCTCTGGTACTGCCTCTTTTATG
GTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCTCATTAACAACACC
ATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTTGATTCTCTTACTG
TCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTCACACGTCATAACA
AAAACAGACATGGCATGGGTCTTGAGCTTCTGGTTCTGCTCTAGAGGCAC
ATTTGAGTCTCTCAAGAATGAGAACAGCTTTTGGGCTGATGGTGCAATCT
CAAAGATCCTCAAGAAGAATTTAAGACCCAATTCTCCAGCATTCTTCTTC
ATTACATTCCATGACTTGACAACTAAAGCTTCTTGCTCTTCAGTAAAGGC
TCTACCTTCGTTAATGTTGGCCATTGATTTCTATTTGGACACCTGAGGAT
TGAATGTGA
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