CN187562

Overview
NameCN187562
Unique NameCN187562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A1C_SOYBN (1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 66/243 (27.16%), Postives = 108/243 (44.44%), Query Frame = 2
Query:   98 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF-QSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            RA   +    G+   R+ +A  +    G     DP+ I ++ GA+ A H +    +    D  L PIP YP +   +    G  LVP   D +  + L    ++   E AK   I V+ L++ NP NP G V+     R ++ F  ++ + L++DE+Y   V+     F S  ++       E D +LV    S+SK   G  G R G   +  ++  V     K++S  L S  +  +LAS+
Sbjct:   85 RAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPDRIVMSGGATGA-HEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFKLTKQALEDAYEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEIYSATVF-SHPSFISIAEILEEDTDIECDRNLVHIVYSLSKDM-GFPGFRVGI--IYSYNDAVVHCARKMSSFGLVSTQTQYLLASM 322          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A110_ARATH (Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 45/182 (24.73%), Postives = 89/182 (48.90%), Query Frame = 2
Query:   77 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIE--ARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 613
            I D +      +Y  S G+  L+  +A  +    ++    DP+ + LT GAS A+ ++   L  S N   L P P  P Y   +    G  ++      A  + +    + +    AK +G+ +R +++ NP NP G +L+ EN  A++DF ++  + ++++E++  +V+  E +F S  ++
Sbjct:  194 ISDGLSISGIASYEPSDGLLELKMAVAGFMTEATKNSVTFDPSQLVLTSGASSAIEILSFCLADSGN-AFLVPTPCSPGYDRDVKWRTGVDIIHVPCRSADNFNMSMVVLDRAFYQAKKRGVRIRGIIISNPSNPMGSLLSRENLYALLDFARERNIHIISNEIFAGSVHGEEGEFVSMAEI 374          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A1C_PHAAU (1-aminocyclopropane-1-carboxylate synthase (Fragment) OS=Phaseolus aureus GN=ACS5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 64/243 (26.34%), Postives = 109/243 (44.86%), Query Frame = 2
Query:   98 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF-QSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            RA   +    G+   R+ +A  +    G     DP+ I ++ GA+ A H +    +    +  L PIP YP +   +    G  LVP   D +  + L    ++   E A+   I V+ L++ NP NP G ++  +  R +V F  ++ + L+ DE+Y   V+  +  F S  ++       E D +LV    S+SK   G  G R G   +  ++  V     K++S  L S  +  +LAS+
Sbjct:   36 RAIANFQDYHGLAEFRNAVAKFMARTRGNRITFDPDRIVMSGGATGA-HEVTAFCLADPGEAFLVPIPYYPGFDRDLRWRTGVKLVPVMCDSSNNFVLTKEALEDAYEKAREDNIRVKGLLITNPSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVF-SQPGFISIAEILEDETDIECDRNLVHIVYSLSKDM-GFPGFRVGI--IYSYNDAVVNCARKMSSFGLVSTQTQYLLASM 273          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: AAT1_BACSU (Aspartate aminotransferase OS=Bacillus subtilis GN=aspB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 58/202 (28.71%), Postives = 102/202 (50.50%), Query Frame = 2
Query:  113 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGY 712
            Y+ S G+  L+++IA   +        P+ I +  GA  A++ + Q+++  E D ++ P P +  Y   + L GG   P Y++     GLE +  K   E  K   IT   +A+V+ +P NPTG +  EE   A+ + C +  +++++DE+Y++  Y   KK  S  ++S  +    K+ +++    VSK  H   G R GY
Sbjct:   63 YTPSGGLAELKNSIAEKFKRDQNIEYKPSQIIVCTGAKHALYTLFQVIL-DEEDEVIIPTPYWVSYPEQVKLAGGK--PVYVE-----GLEENHFKISPEQLK-NAITEKTKAIVINSPSNPTGVMYTEEELSALGEVCLEHDILIVSDEIYEKLTY-GGKKHVSIAQLSDRL----KEQTVI-INGVSKS-HSMTGWRIGY 248          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSJ (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 62/245 (25.31%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   98 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV-PEKKFHSFKKVSRSMGYGEKDIS--LVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            R    +    G+   ++ +A  +  + G+    DP++I LT GA+ A   +M   +    D  L P P YP +   +    G  +VP +   A G+ +    +      A+ + + V+ +++ NP NP G      +   IVDF   +G+ L++DE+Y    +  P   F S  +V      G  D+S  +    S+SK   G  G R G   +   +  V     K++S  L S+ +  +LA+L
Sbjct:   89 RELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGATSANEALM-FCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDDAYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAEPPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDL-GLPGFRVG--AIYSANAAVVSAATKMSSFGLVSSQTQYLLAAL 329          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 62/245 (25.31%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   98 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV-PEKKFHSFKKVSRSMGYGEKDIS--LVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            R    +    G+   ++ +A  +  + G+    DP++I LT GA+ A   +M   +    D  L P P YP +   +    G  +VP +   A G+ +    +      A+ + + V+ +++ NP NP G      +   IVDF   +G+ L++DE+Y    +  P   F S  +V      G  D+S  +    S+SK   G  G R G   +   +  V     K++S  L S+ +  +LA+L
Sbjct:   89 RELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGATSANEALM-FCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDDAYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIYAGTAFAEPPAGFVSALEVVAGRDGGGADVSDRVHVVYSLSKDL-GLPGFRVG--AIYSANAAVVSAATKMSSFGLVSSQTQYLLAAL 329          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 43/170 (25.29%), Postives = 89/170 (52.35%), Query Frame = 2
Query:  191 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS---------MGYG-EKDISLVSFQS 667
            DP+++ +T G +PA+ ++    +    +  L P P YP +   I    G  L+P +   +  + +  S +++ L  A+ +G  V  ++  NP NP G +L+ E    I+ F +++ + +++DE++  +VY  +K+F S  +++ S         + YG  KD+S+  F++
Sbjct:  176 DPSNMVITAGGTPAIEVLA-FCLADHGNAFLIPTPYYPGFDRDIKFRTGVELIPVHCRSSDNFTVTVSALEQALNQARKRGSKVSGILFSNPSNPVGNILSRETLCDILRFAQEKNIHVISDEIFAGSVY-GDKEFVSMAEIAGSGEFDKTRVHIIYGLSKDLSIPGFRA 343          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: AAT_BACY2 (Aspartate aminotransferase OS=Bacillus sp. (strain YM-2) PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 53/203 (26.11%), Postives = 95/203 (46.80%), Query Frame = 2
Query:  113 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV---RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGY 712
            Y+ S G+  L+  I    +  +     PN+I +  GA   ++ + Q+++ +E D ++ PIP +  Y   + L GG  VP Y++        TSE   ++ A + K       +A+++ +P NPTG V   E    I     +  +++++DE+Y++ +Y   + F S  ++S      E     +    VSK  H   G R GY
Sbjct:   65 YTPSGGLPALKQAIIEKFKRDNQLEYKPNEIIVGVGAKHVLYTLFQVIL-NEGDEVIIPIPYWVSYPEQVKLAGG--VPVYIEA-------TSEQNYKITAEQLKNAITDKTKAVIINSPSNPTGMVYTREELEDIAKIALENNILIVSDEIYEKLLYNGAEHF-SIAQISE-----EVKAQTIVINGVSKS-HSMTGWRIGY 250          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A1C_TOBAC (1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 60/242 (24.79%), Postives = 105/242 (43.39%), Query Frame = 2
Query:   98 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            RA   +    G+   R  IA  +E   G     DP  + +  GA+ A   ++   +    D  L P P YP ++  +    G  L+P   D +  + + T  V++  E A+   I V+ L++ NP NP G  L  +  + ++ F  +  + L+ DE+Y   V+   +     + +     +  KD+  + + S+SK   G  G R G   V  F+  V     K++S  L S  +  +LA +
Sbjct:   85 RAIANFQDYHGLPEFRSAIAKFMEKTRGGRVTFDPERVVMAGGATGANETII-FCLADTGDAFLVPSPYYPAFNRDLRWRTGVQLIPIPCDSSNNFQITTKAVREAYENAQKSNIKVKGLILTNPSNPLGTTLDRDTLKNLLTFTNQHNIHLVCDEIYAATVFNTPQFVSIAEILDDETSHCNKDLVHIVY-SLSKDM-GLPGFRVGI--VYSFNDAVVNCARKMSSFGLVSTQTQYLLAEM 321          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A11_PRUMU (1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 55/209 (26.32%), Postives = 97/209 (46.41%), Query Frame = 2
Query:  191 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            DPN + ++ GA+ A  ++M   +    D  L P P YP +   +    G  +VP   D +  + +    ++   E A+   I V+ L++ NP NP G  L      ++V+F  ++ + L+ DE+Y   V+     F    +V ++M      I +V   S+SK   G  G R G   V  ++ +V     K++S  L S+ +  +L S+
Sbjct:  119 DPNRVVMSGGATGANELVM-FCLADPGDAFLVPSPYYPAFFRDLGWRTGVQIVPVDCDSSNNFKITKEALEAAYEKAQKNNINVKGLIITNPSNPLGTTLDRNTLESLVEFINQKNIHLVCDEIYAATVF-SSPTFTCISEVIQNMNCNPNLIHIV--YSLSKDM-GLPGLRVGI--VYSYNDDVVNIGRKMSSFGLVSSQTQHMLPSM 320          
The following BLAST results are available for this feature:
BLAST of CN187562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
1A1C_SOYBN6.820e-1327.161-aminocyclopropane-1-carboxylate synthase OS=Glyc... [more]
1A110_ARATH6.820e-1324.73Probable aminotransferase ACS10 OS=Arabidopsis tha... [more]
1A1C_PHAAU1.519e-1226.341-aminocyclopropane-1-carboxylate synthase (Fragme... [more]
AAT1_BACSU1.984e-1228.71Aspartate aminotransferase OS=Bacillus subtilis GN... [more]
1A11_ORYSJ4.421e-1225.311-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A11_ORYSI4.421e-1225.311-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A112_ARATH4.421e-1225.29Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
AAT_BACY27.540e-1226.11Aspartate aminotransferase OS=Bacillus sp. (strain... [more]
1A1C_TOBAC7.540e-1224.791-aminocyclopropane-1-carboxylate synthase OS=Nico... [more]
1A11_PRUMU7.540e-1226.321-aminocyclopropane-1-carboxylate synthase 1 OS=Pr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004K13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187562 ID=CN187562; Name=CN187562; organism=Citrus sinensis; type=EST; length=814bp
GAGGCATCCATCCATTTTGGACAGAAGTGAAACACAAGGTTTGTTCAGTG
CGGATTCTATAGAGCGAGCTTGGCAGATACTGGATCAAATTCCTGGGCGA
GCAACTGGGGCTTACAGTCATAGTCAGGGTATCAAGGGACTGCGTGATAC
AATCGCTGCTGGAATTGAGGCTCGTGATGGTTTTCCTGCTGATCCAAATG
ATATTTTCTTGACAGATGGTGCAAGTCCTGCTGTCCACATGATGATGCAG
TTATTGATAAGATCAGAGAACGATGGAATTCTCTGTCCTATTCCTCAGTA
CCCTTTATACTCTGCTTCAATTGCTCTCCATGGTGGGACCTTGGTGCCTT
ACTACCTAGATGAAGCAACAGGATGGGGATTGGAAACTTCGGAGGTTAAG
AAGCAATTGGAGGCCGCCAAGGCCAAAGGTATTACCGTTAGGGCCTTGGT
TGTAATAAATCCAGGCAATCCAACTGGACAGGTTCTTGCTGAAGAAAACC
AGCGTGCAATTGTGGATTTCTGCAAAAAGGAGGGTCTTGTTCTTCTTGCA
GATGAGGTATACCAGGAAAATGTTTATGTGCCAGAGAAAAAATTCCATTC
CTTTAAGAAGGTATCCCGATCCATGGGGTATGGTGAGAAGGATATATCCC
TTGTATCATTTCAGTCAGTTTCTAAAGGTTACCATGGGGAGTGTGGAAAA
AGAGGAGGTTACATGGAGGTCACTGGGTTCAGTCCTGAAGTAAGGGAGCA
AATATACAAAGTGGCATCTGTGAATCTTTGTTCTAATATCTCCGGCCAAA
TTCTGGCAAGCCTC
back to top