CN187562

Overview
NameCN187562
Unique NameCN187562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: AAT_SULSO (Aspartate aminotransferase OS=Sulfolobus solfataricus GN=aspC PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 43/159 (27.04%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  113 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD----EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 577
            Y+ + GI  LR+ IA  +  R G      ++ +T GA PA+ ++  L I + +D ++ P P +  Y+  + L GG   P Y +       G+ ++  +++ ++          + +V  NP NPTG + +  + + IVD  +   ++LL+DE+Y   VY
Sbjct:   68 YTSAFGIDELREKIAQYLNTRYGTDVKKEEVIVTPGAKPALFLVFILYI-NPSDEVILPDPSFYSYAEVVKLLGGK--PIYANLKWSREEGFSIDVDDLQSKISKR------TKMIVFNNPHNPTGTLFSPNDVKKIVDISRDNKIILLSDEIYDNFVY 217          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A1L2_MOUSE (1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Mus musculus GN=Accsl PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 49/172 (28.49%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  113 YSHSQGIKGLRDTIAAGIE--ARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEAT------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 601
            YS  +G   LR+ +A+ +    +   P DP ++ + +G S +V   + +++    D +L P P Y  +  S  L+    L+P +L+          + L   ++K  L  AK K   V+ LV+INP NP G V  + + +  + F K   L ++ DE+Y  +V+ P   FHS
Sbjct:  226 YSDWKGQPFLREELASFLTHYCKAPTPLDPENVVVLNGCS-SVFASLAMVLCDPGDALLIPTPCYNGFVFSSHLYSKIELIPVHLESQVPRSNLDSFQLTVDKLKLALTQAKKKAKKVKGLVLINPQNPLGDVYTQSSLQEYLVFAKTHKLHVIMDEIYMLSVFEPSVTFHS 396          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A13_SOLLC (1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  191 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 577
            D N++ LT GA+ A   +M   + ++ D  L P P YP +   +    G  +VP +   + G+ +  S +++    AK + + V+ ++V NP NP G  L       ++ F  ++G+ L++DE+Y   V+
Sbjct:  110 DSNNLVLTAGATSANETLM-FCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVF 238          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A12_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.742e-11
Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  191 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 577
            + N+I LT GA+ A   +M  L  +  D  L P P YP +   +    G  +VP +   + G+ +  S +++  + A+ + + V+ ++V NP NP G  +  +    + DF   +G+ L++DE+Y   V+
Sbjct:  110 EANNIVLTAGATSANETLMFCLAEA-GDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQAYKDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVF 238          
BLAST of CN187562 vs. ExPASy Swiss-Prot
Match: 1A1C_DIACA (1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 52/209 (24.88%), Postives = 102/209 (48.80%), Query Frame = 2
Query:  191 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASL 814
            +P+ I ++ GAS +  ++  L   +  D  L P P YP ++  +    G  L+P+    +  + +    ++   E A  K I V+ ++V NP NP G VL ++  + ++ F   + + L+ DE+Y   V+     F S  +V + M +  +D+  + + S+SK   G  G R G   +  ++  V     +++S  L S+ +  ++A+L
Sbjct:  119 NPDRIVMSGGASASETLLFCLA--NPGDAFLIPSPYYPAFNRDLRWRTGVNLIPFTCSSSNNFKITKEALQSAYEDALKKNIKVKGIIVTNPSNPLGTVLDKDTLKMLLTFVNAKNIHLVCDEIYATTVF-NSPSFISVAEVIKDMPHVNQDLVHILY-SLSKDM-GMPGFRVGI--IYSYNDRVVSTARRMSSFGLVSSQTQFMIAAL 320          
The following BLAST results are available for this feature:
BLAST of CN187562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
AAT_SULSO2.194e-1127.04Aspartate aminotransferase OS=Sulfolobus solfatari... [more]
1A1L2_MOUSE2.865e-1128.491-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A13_SOLLC2.865e-1127.691-aminocyclopropane-1-carboxylate synthase 3 OS=So... [more]
1A12_CUCMA3.742e-1127.691-aminocyclopropane-1-carboxylate synthase CMA101 ... [more]
1A1C_DIACA4.888e-1124.881-aminocyclopropane-1-carboxylate synthase OS=Dian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187562 ID=CN187562; Name=CN187562; organism=Citrus sinensis; type=EST; length=814bp
GAGGCATCCATCCATTTTGGACAGAAGTGAAACACAAGGTTTGTTCAGTG
CGGATTCTATAGAGCGAGCTTGGCAGATACTGGATCAAATTCCTGGGCGA
GCAACTGGGGCTTACAGTCATAGTCAGGGTATCAAGGGACTGCGTGATAC
AATCGCTGCTGGAATTGAGGCTCGTGATGGTTTTCCTGCTGATCCAAATG
ATATTTTCTTGACAGATGGTGCAAGTCCTGCTGTCCACATGATGATGCAG
TTATTGATAAGATCAGAGAACGATGGAATTCTCTGTCCTATTCCTCAGTA
CCCTTTATACTCTGCTTCAATTGCTCTCCATGGTGGGACCTTGGTGCCTT
ACTACCTAGATGAAGCAACAGGATGGGGATTGGAAACTTCGGAGGTTAAG
AAGCAATTGGAGGCCGCCAAGGCCAAAGGTATTACCGTTAGGGCCTTGGT
TGTAATAAATCCAGGCAATCCAACTGGACAGGTTCTTGCTGAAGAAAACC
AGCGTGCAATTGTGGATTTCTGCAAAAAGGAGGGTCTTGTTCTTCTTGCA
GATGAGGTATACCAGGAAAATGTTTATGTGCCAGAGAAAAAATTCCATTC
CTTTAAGAAGGTATCCCGATCCATGGGGTATGGTGAGAAGGATATATCCC
TTGTATCATTTCAGTCAGTTTCTAAAGGTTACCATGGGGAGTGTGGAAAA
AGAGGAGGTTACATGGAGGTCACTGGGTTCAGTCCTGAAGTAAGGGAGCA
AATATACAAAGTGGCATCTGTGAATCTTTGTTCTAATATCTCCGGCCAAA
TTCTGGCAAGCCTC
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