CN187557

Overview
NameCN187557
Unique NameCN187557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.178e-47
Identity = 86/137 (62.77%), Postives = 112/137 (81.75%), Query Frame = 3
Query:   60 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 470
            NA SGM V D+ K  FLEL+ K+T+R++VFKI+E +K+VVVEK G P++SY++F ASLP ++CRYAVYDFDFVT ENCQKSKI F AWSP TS +R+K++Y++SKD+  REL GI  E+QATDPTE+ L+V+R R N
Sbjct:   10 NAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.208e-46
Identity = 79/143 (55.24%), Postives = 119/143 (83.22%), Query Frame = 3
Query:   42 FLQKMANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 470
            F++  ANA+SG+ V  +CK  FLEL+ K+++R+++FKI++K K+VVVEK G  ++S+++F  SLP  +CRYA+YDFDFVT+ENCQKSKI F+AWSP  S++R+KM+YA+SK+RF+RELDG+  E+QATDP+E+ ++++R R +
Sbjct:    3 FVRSRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.289e-44
Identity = 79/137 (57.66%), Postives = 114/137 (83.21%), Query Frame = 3
Query:   54 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            MAN++SG+A+ DDCKLKF EL++KR +RFI F ++ K K+++V+K+G+ + SYE+FT+SLP  +CR+A+YDFDF+T E+  KS+I +I WSPD +KVRSKM+YASS +RFK+EL+GIQ+E+QATD  E+ LD ++ R
Sbjct:    1 MANSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.101e-43
Identity = 80/137 (58.39%), Postives = 114/137 (83.21%), Query Frame = 3
Query:   54 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            MANA SG+AV+D+C LKF EL++KR +RFI FK+++K K++VV+++G+ + SY++FT SLP ++CRYA+YDFDFVT E+ QKS+I +I WSP ++KV+SKM+YASS  +FK  L+GIQVELQATD +E+ LD ++ R
Sbjct:    1 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDR 137          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.805e-42
Identity = 77/134 (57.46%), Postives = 106/134 (79.10%), Query Frame = 3
Query:   63 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            A +GM V D+C   F+++K K+ +R+IVFKIEEK ++V V+K+G   +SY +   SLP D+CRYAV+DFDFVT +NC+KSKI FIAWSP+ SK+R+K++YA+SKD  +R L+GI  ELQATDPTEMG D+++ R
Sbjct:    8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDR 141          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41
Identity = 72/130 (55.38%), Postives = 106/130 (81.54%), Query Frame = 3
Query:   81 VDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 470
            V +  K  F ELK ++ +R+++FKI+++++++VVEK G P +SY++FTASLPAD+CRYAVYD DFV+D+NC+KSKI FI+WSP  S++R+K IYA S+++F+ ELDG+  E+QATDP +M L+V+R R N
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.293e-40
Identity = 73/134 (54.48%), Postives = 104/134 (77.61%), Query Frame = 3
Query:   63 AASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            A  GM V ++C+  F+E+K K+ +RF+V+KI+E+ + V+V+K+G P + YE   A+LP D+CRYAV+DFDFVT +NCQKSKI FIAWSP  S++R+K++YA+SK   +R LDG+  E+QATD +EMG DV+R R
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGR 141          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.095e-39
Identity = 70/126 (55.56%), Postives = 99/126 (78.57%), Query Frame = 3
Query:   87 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            DDCK  F+E+K K+ +R++V+K+EEK ++V V+K+G   +SY++  ASLP D+CRYAV+DFD+VT +NC+ SKI FI WSP+ S++R KM+YA+SK   +R LDG+  ELQATDPTEMG D ++ R
Sbjct:    3 DDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDR 128          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.186e-39
Identity = 76/150 (50.67%), Postives = 107/150 (71.33%), Query Frame = 3
Query:   54 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDE-----------NCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 470
            MANA SG+AV ++CK +F EL+A R +RF+VFKI++  +QVVV+++G     ++  TASLPAD CRYAVYD DF   +              +SKI F++WSP  + VRSKM+YASS + FK+ELDG+Q++LQATDP+E+ LDV++  T+
Sbjct:    1 MANATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.982e-37
Identity = 83/138 (60.14%), Postives = 98/138 (71.01%), Query Frame = 3
Query:   75 MAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKL------GEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 470
            M + DDCKL FLELK +RT+R IV+KIE+   QV+VEK       GE   SYE F  SLPADECRYA+ D +FV  E     KI FIAWSP T+K+R KMIY+S+KDRFKRELDGIQVE  ATD T++ LD +R R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNM-QVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
The following BLAST results are available for this feature:
BLAST of CN187557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ADF6_ARATH3.178e-4762.77Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF11_ORYSJ1.208e-4655.24Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF4_ORYSJ3.289e-4457.66Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_MAIZE8.101e-4358.39Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF5_ARATH1.805e-4257.46Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF10_ORYSJ1.528e-4155.38Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF5_ORYSJ1.293e-4054.48Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF9_ARATH1.095e-3955.56Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF3_ORYSJ3.186e-3950.67Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]
ADF11_ARATH2.982e-3760.14Putative actin-depolymerizing factor 11 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187557 ID=CN187557; Name=CN187557; organism=Citrus sinensis; type=EST; length=806bp
AGGGATTTTCTCTCAATTTCCCTCATTTTCTCTCCCCTTTTTTTCTCCAG
AAAATGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTGCAAGCT
GAAGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAGTTTTCA
AGATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGTGAACCA
TCTGATAGTTATGAGAATTTCACTGCTAGCCTCCCAGCGGATGAGTGCCG
ATACGCTGTCTACGATTTTGACTTTGTGACTGATGAGAACTGCCAGAAGA
GCAAGATTATTTTCATTGCATGGTCCCCCGACACCTCAAAGGTGAGAAGC
AAGATGATTTATGCTAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGG
AATTCAGGTAGAGTTGCAGGCTACTGATCCTACTGAGATGGGTCTTGATG
TCATGAGAAGCCGCACAAATTAAATTTTAGACTTGCCTATGGTGCAATGG
AAAGCCCATACTATATTGTTCACTTAAATGTAATGTCTATATCTTTTATG
ACTTATAACTTGCTTTGCTATCAGCTTGTGGTCGGAGTTAAATACTTTTT
TAAGTTGTCTTCTCATTTGTTATATCTGTGGATTAATAGGGTGAGTATCC
CCATATGGTGTGATGATAATTACAGACTAATATATAATGGTTTGTGGGGG
GTACATATCTCATTTTAGCTTTGATTGCTTGCAACTGGGTTATTTGCAGT
AGTATCAGTGTAATACCTCAGTTACATGATTTGTTAAAAAAAAAAAATAA
AAAAAA
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