CN187557

Overview
NameCN187557
Unique NameCN187557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.100e-23
Identity = 52/128 (40.62%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   69 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDEN-CQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 449
            SG+AV D+    F +LK  + Y+FI++ + + + +++V++     D Y+ F   LP ++C YAVYDF++    N  ++SKI+F  WSPDT+ VRSKM+YASSKD  +R L+G+  ++Q TD +E+  +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAEQD-YDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 3
Query:   69 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 449
            SG+AV D+    F +LK  + Y+F++F +   +  ++V++     D Y+ F   LP D+C YAVYDF++ ++    ++SKI+F  WSPDT+ +RSKM+YASSKD  +R L+G+  ++Q TD +E+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.200e-23
Identity = 53/131 (40.46%), Postives = 85/131 (64.89%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVM 455
            +SG+    +C  KF ELK  +   ++++ + E ++ +VV K  E  D +++F A LP  +CR+AVYDF+F +      ++K+ FI WSPD + V++KMI+ASSK+  +R LDGI  E+QATD +E+  D +
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDAL 131          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.459e-23
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 440
            +SG+A+  +C   F +LK  R Y  I+++I +  K+++V+       S++ FT  LP +ECRY V D+ +  +E  QKSKI F+AW PDT+ ++ KM+  SSKD  ++   GIQVE+Q TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 49/141 (34.75%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPA---DECRYAVYDFDFV-----TDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            ASG+ V D CK  + E+K  + +R+++F I + +KQ+ VE + + +  Y+ F   +      ECRY ++DF+++     T E+ +K K+  ++W PDT+KV+ KM+Y+SS D  K+ L G+Q  +QATD +E   + +  +
Sbjct:    2 ASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRD-EKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 3
Query:   90 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC-----------RYAVYDFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 449
            DC   F +LK  + Y+FIV+K+ +  K++V++K  E  D +E+F  +L                RYAVYDF++ +   +  ++KI FIAWSPD + ++ KMIYASSK+  KR L GI  ELQA D  ++  D
Sbjct:    2 DCITAFNDLKLNKKYKFIVYKLSDDYKEIVIDKASESRD-WEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            ASG+ V+D+    F E+K          K+  + ++F +   +K+++VE+        +GE   D Y  F   LP D+CRY +YD  + T E+ +K  ++FI W+PD + ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVQDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 464
            ASG+ V+D+    F E+K          K+  + ++F +   +K+++VE+        +GE   D Y  F   LP D+CRY +YD  + T E+ +K  ++FI W+PD + ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVPDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.222e-16
Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 422
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN187557 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.222e-16
Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 3
Query:   66 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEKLGE---------PSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQA 422
            ASG+AV D     F ++K          K+  + ++F + E +K +++E+  E           D Y  F   LP  +CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of CN187557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COFI_KLULA1.100e-2340.63Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_ASHGO1.876e-2339.84Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COFI_CRYNE3.200e-2340.46Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COF1_DICDI5.459e-2340.80Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
CADF_DROME1.138e-2034.75Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COFI_GIBZE6.246e-1940.15Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_XENLA9.972e-1735.10Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF2_XENTR1.302e-1635.10Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
COF1_RAT2.222e-1636.50Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN2.222e-1636.50Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187557 ID=CN187557; Name=CN187557; organism=Citrus sinensis; type=EST; length=806bp
AGGGATTTTCTCTCAATTTCCCTCATTTTCTCTCCCCTTTTTTTCTCCAG
AAAATGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTGCAAGCT
GAAGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAGTTTTCA
AGATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGTGAACCA
TCTGATAGTTATGAGAATTTCACTGCTAGCCTCCCAGCGGATGAGTGCCG
ATACGCTGTCTACGATTTTGACTTTGTGACTGATGAGAACTGCCAGAAGA
GCAAGATTATTTTCATTGCATGGTCCCCCGACACCTCAAAGGTGAGAAGC
AAGATGATTTATGCTAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGG
AATTCAGGTAGAGTTGCAGGCTACTGATCCTACTGAGATGGGTCTTGATG
TCATGAGAAGCCGCACAAATTAAATTTTAGACTTGCCTATGGTGCAATGG
AAAGCCCATACTATATTGTTCACTTAAATGTAATGTCTATATCTTTTATG
ACTTATAACTTGCTTTGCTATCAGCTTGTGGTCGGAGTTAAATACTTTTT
TAAGTTGTCTTCTCATTTGTTATATCTGTGGATTAATAGGGTGAGTATCC
CCATATGGTGTGATGATAATTACAGACTAATATATAATGGTTTGTGGGGG
GTACATATCTCATTTTAGCTTTGATTGCTTGCAACTGGGTTATTTGCAGT
AGTATCAGTGTAATACCTCAGTTACATGATTTGTTAAAAAAAAAAAATAA
AAAAAA
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